Human skin
A cohort primer: 324 datasets from 27 papers, embedded per technology family.
This primer describes a cohort; it is not a benchmark. It does not rank papers, technologies or methods. The batch correction (Harmony on the section) is shown for orientation only: well-mixed embeddings are not proof of a correct biology. This cohort's technologies may also differ by paper and lab. Where one paper used one technology, a technology effect can't be separated from a paper effect.
52 members dropped
7q6h5acppM7SuuOq0000no paper (no study_id, series or collection) (10,662 cells)nyV1oZ2PMvleAUcS0000no paper (no study_id, series or collection) (148,741 cells)0F3pfJxKJUD1Rvti0000no paper (no study_id, series or collection) (11,535 cells)LCAXoD0ctWEYb92Y0001panel shares 56 genes with the rest of its technology (90,106 cells)YAQaY5xeiFyahJqy0000no paper (no study_id, series or collection) (5,914 cells)OtQgNIuIv75Nhexu0000no paper (no study_id, series or collection) (5,384 cells)brS23RiGJBDL5SY50000no paper (no study_id, series or collection) (11,718 cells)zP4mrVjugWwVzi8s0000no paper (no study_id, series or collection) (145,489 cells)yJkswgwZedAf1Q5E0001no paper (no study_id, series or collection) (106,980 cells)qIDeKej1HdhQi9vm0000no paper (no study_id, series or collection) (73,412 cells)xuOaJp7taK9yEOve0000no paper (no study_id, series or collection) (22,670 cells)iptmV7eDW7GsHUWj0000no paper (no study_id, series or collection) (22,048 cells)qjXlm5zQPft4Nflc0000no paper (no study_id, series or collection) (32,861 cells)IMyO1LowcFauuSGl0000no paper (no study_id, series or collection) (17,841 cells)igOi45RRTtaWWwKy0000no paper (no study_id, series or collection) (10,450 cells)4q8aTFCtY7dGVh8z0000no paper (no study_id, series or collection) (7,378 cells)7DwS93Y0xAoFkd1e0000no paper (no study_id, series or collection) (57,936 cells)bk3rVhQIJtUrwdTc0000no paper (no study_id, series or collection) (101,400 cells)9SxZ5tvxQGNA1yjE0000no paper (no study_id, series or collection) (9,960 cells)FnhStaLbcPczbBBx0000no paper (no study_id, series or collection) (140,949 cells)2DrML2fUqgcYXyFn0000no paper (no study_id, series or collection) (17,548 cells)HGLfHr3UQARyvI0F0000no paper (no study_id, series or collection) (19,297 cells)iu2I2SnNFkB9WdCD0000no paper (no study_id, series or collection) (106,573 cells)26Fo6iDsILpxQ0MX0000panel would reduce 155 shared genes to 61 (51,539 cells)gHOpZTOsGPHECkuK0000panel would reduce 155 shared genes to 61 (213,088 cells)2n9BpkK6JkPPHvba0002no paper (no study_id, series or collection) (112,551 cells)y0eYODAHRDVnFbvx0001no paper (no study_id, series or collection) (87,499 cells)uVFIWy2l86B79F700000no paper (no study_id, series or collection) (7,106 cells)yY3XV9HxnHqU3ZC30001panel shares 56 genes with the rest of its technology (68,476 cells)NIkmqFKMyVDS510k0000no paper (no study_id, series or collection) (44,029 cells)OwUSceHzXsYbDOr40000no paper (no study_id, series or collection) (103,598 cells)DVxzXnoTI9fTcTJr0000no paper (no study_id, series or collection) (102,723 cells)Bfx67JT3ppxrpVUr0000no paper (no study_id, series or collection) (10,079 cells)eApEdW8CROyfkZdg0000no paper (no study_id, series or collection) (11,195 cells)aomaqzhnDzLFEHLv0000no paper (no study_id, series or collection) (19,931 cells)imFqKEVpNMpXrMe70000no paper (no study_id, series or collection) (11,937 cells)ydF7XXLo2DbDRjDm0000no paper (no study_id, series or collection) (47,962 cells)CCA4l3OD2iZfYzlq0000no paper (no study_id, series or collection) (19,271 cells)e0MbA3SQd7a0OWFQ0000no paper (no study_id, series or collection) (52,716 cells)LdeKmdZkygSqNla20000no paper (no study_id, series or collection) (6,679 cells)wu2hTkZzsbKLu57c0000no paper (no study_id, series or collection) (86,282 cells)SfnTC51gYbitNwFn0000no paper (no study_id, series or collection) (6,800 cells)g493WoTLEjvn7YRl0000no paper (no study_id, series or collection) (42,558 cells)cTACJdXquDt5HGuz0000no paper (no study_id, series or collection) (136,728 cells)bs7zBvjus9vKXO2t0000no paper (no study_id, series or collection) (20,595 cells)NaXU4hPhf5Jvov8n0000no paper (no study_id, series or collection) (27,031 cells)6Z1QAvoyg0VVBAmd0000no paper (no study_id, series or collection) (11,011 cells)H6ATHoqBYPMztWmH0000no paper (no study_id, series or collection) (10,314 cells)9NuVOP1aPEDDGHXB0000no paper (no study_id, series or collection) (13,841 cells)Rq6aPrMH1wzsCWfJ0000no paper (no study_id, series or collection) (20,879 cells)HqbnjVgqfUdVokGm0000no paper (no study_id, series or collection) (8,629 cells)MdiDSlK3jg2Ugo3K0000no paper (no study_id, series or collection) (8,409 cells)
An equal share per dataset, at most 50,000 points per view; datasets smaller than their share are kept whole.
There is no joint view, because only one technology family is left once the technologies below are left out. A joint view uses only the genes that every technology family measures. A technology is left out when too many of its observations fall below its count floor on those genes, or when its panel is too small to share enough genes. Visium is left out because it loses 97% of its observations below 500 counts on the 48 shared genes (limit 50%). Spatial Transcriptomics is left out because it loses 100% of its observations below 500 counts on the 48 shared genes (limit 50%). Visium HD is left out because it loses 100% of its observations below 200 counts on the 48 shared genes (limit 50%). MERSCOPE is left out because it loses 76% of its observations below 10 counts on the 48 shared genes (limit 50%).
Counts per cell, bin or spot, from the points of the family views. Each dot is an observation; the violin shows each dataset's spread.
! marks a dataset the QC step flagged; hover its name for the reason.
Genes with at least one count per cell, bin or spot, from the same points.
! marks a dataset the QC step flagged; hover its name for the reason.
| uid | Title | Technology | Paper | Licence | Status |
|---|---|---|---|---|---|
| dW1m7GzIvN6c1cmz0000 | GSM7657718 | Visium | 10.1016/j.crmeth.2024.100759 ↗ | NCBI GEO policy | Kept |
| XgW5WDDDqXSgZoxG0000 | GSM9483977 | Visium | 10.3389/fimmu.2026.1870524 ↗ | NCBI GEO policy | Kept |
| tmXsTSERDNOqO2OM0000 | NCBI469 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| LqSr9Rjv3YT3FlvO0000 | human-melanoma-if-stained-ffpe-2-standard | Visium | 10x Genomics demo datasets | CC BY 4.0 | Kept |
| 4CtcXsNU1uQrEWuy0000 | GSM9338175 | Visium | 10.1172/jci.insight.198954 ↗ | CC BY 4.0 | Kept |
| yWgxiBGu5Kxhy44E0000 | GSM8797975 | Visium | 10.1038/s41586-025-09370-8 ↗ | NCBI GEO policy | Kept |
| 7q6h5acppM7SuuOq0000 | GSM9079614 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| NvG6IYtZq7nyhk2x0000 | GSM9368378 | Visium | 10.1186/s13287-026-05101-6 ↗ | NCBI GEO policy | Kept |
| WyB8hE1EWKohlD1e0000 | GSM9769919 | Visium | geo-gse333617 | NCBI GEO policy | Kept |
| s3THnvRstHtMzvfr0000 | GSM9769922 | Visium | geo-gse333617 | NCBI GEO policy | Kept |
| u4PSqhJm4dF5yia30000 | GSM9338171 | Visium | 10.1172/jci.insight.198954 ↗ | CC BY 4.0 | Kept |
| oCOOiEtBYK15jvif0000 | GSM9338176 | Visium | 10.1172/jci.insight.198954 ↗ | CC BY 4.0 | Kept |
| ChVEyCG6WpGXmu160000 | GSM9338172 | Visium | 10.1172/jci.insight.198954 ↗ | CC BY 4.0 | Kept |
| QOoHyTorGsABxNuf0000 | GSM9338180 | Visium | 10.1172/jci.insight.198954 ↗ | CC BY 4.0 | Kept |
| SgEwvOOVZ66UKd4S0000 | GSM9338177 | Visium | 10.1172/jci.insight.198954 ↗ | CC BY 4.0 | Kept |
| WZ2GVQhhNvvaXdb10000 | GSM9338178 | Visium | 10.1172/jci.insight.198954 ↗ | CC BY 4.0 | Kept |
| WC4CjjsyXCekv9Z60000 | GSM9769920 | Visium | geo-gse333617 | NCBI GEO policy | Kept |
| iHukRyVvhfcUojw20000 | GSM9338173 | Visium | 10.1172/jci.insight.198954 ↗ | CC BY 4.0 | Kept |
| EVXo2TXyclLfOejQ0000 | GSM9338179 | Visium | 10.1172/jci.insight.198954 ↗ | CC BY 4.0 | Kept |
| Ch0NZdwIH6Gm7gO80000 | NCBI768 | Spatial Transcriptomics | 10.1016/j.cell.2020.05.039 ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| y7dS4Kj6sWfxi1Fw0000 | GSM9043135 | Visium | 10.1016/j.jid.2026.03.048 ↗ | NCBI GEO policy | Kept |
| ECUWeWTWebGUZgLX0000 | GSM9043134 | Visium | 10.1016/j.jid.2026.03.048 ↗ | NCBI GEO policy | Kept |
| 2UArMyqRCiQJA4Wr0000 | GSM9043136 | Visium | 10.1016/j.jid.2026.03.048 ↗ | NCBI GEO policy | Kept |
| YfZUMl4Pnjz7k7YM0000 | GSM9043133 | Visium | 10.1016/j.jid.2026.03.048 ↗ | NCBI GEO policy | Kept |
| 4IpnbThWMnaVCa8T0000 | NCBI764 | Spatial Transcriptomics | 10.1016/j.cell.2020.05.039 ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| aGdwJoMfz5N7ublk0000 | NCBI759 | Spatial Transcriptomics | 10.1016/j.cell.2020.05.039 ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| NIvuZI5rSnesADt30000 | NCBI767 | Spatial Transcriptomics | 10.1016/j.cell.2020.05.039 ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| zvQ8KfOBKYGEtmnK0000 | GSM7657717 | Visium | 10.1016/j.crmeth.2024.100759 ↗ | NCBI GEO policy | Kept |
| u5VYECLgc3dE8l1p0000 | GSM9060732 | Visium | 10.1136/jitc-2025-014030 ↗ | NCBI GEO policy | Kept |
| oi8oxLDwPQUJJ4Yj0000 | NCBI760 | Spatial Transcriptomics | 10.1016/j.cell.2020.05.039 ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| WN4NrJekJ3Fmu2FA0000 | NCBI762 | Spatial Transcriptomics | 10.1016/j.cell.2020.05.039 ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| 7UEelo33xFiKTlqw0000 | NCBI765 | Spatial Transcriptomics | 10.1016/j.cell.2020.05.039 ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| LkKjHY77IKfWntNC0000 | NCBI766 | Spatial Transcriptomics | 10.1016/j.cell.2020.05.039 ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| EDfikAWPv9v4ygjF0000 | NCBI761 | Spatial Transcriptomics | 10.1016/j.cell.2020.05.039 ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| RjTJbJKlUytqd4Px0000 | NCBI769 | Spatial Transcriptomics | 10.1016/j.cell.2020.05.039 ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| LkAcgScvRxH8HeIN0000 | GSM9483978 | Visium | 10.3389/fimmu.2026.1870524 ↗ | NCBI GEO policy | Kept |
| zmo1zWQV834b8bo60000 | NCBI763 | Spatial Transcriptomics | 10.1016/j.cell.2020.05.039 ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| CyzFJCqYpvZWI55i0000 | NCBI476 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| qlp8L12FqN0t722M0000 | GSM7657719 | Visium | 10.1016/j.crmeth.2024.100759 ↗ | NCBI GEO policy | Kept |
| HI8uvsqFkBXnXeuR0000 | NCBI486 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| w46f0YXZCq2NSRWq0000 | NCBI491 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| lrjSfVY6wlx8muHW0000 | NCBI505 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| Jryg1VAj7xXTa4Uk0000 | NCBI519 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| Boi39gSchDd0NqdQ0000 | NCBI520 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| jWMZ5jZzkZPexVXM0000 | NCBI497 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| yqQY4lx3w09liRUT0000 | NCBI508 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| c7TacjU2zEWmTmmw0000 | NCBI483 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| 40eEez0ot8HpT2tL0000 | NCBI473 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| mitrEidt57TzmUbB0000 | NCBI462 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| 1Y79jorcVL1O2Onf0000 | NCBI474 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| fOBlobzv4spdb7IS0000 | NCBI465 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| AH2rrjMK5gAOnXay0000 | NCBI481 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| 8YfAZZyPW35E7kS30000 | NCBI507 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| 8Hz9R70ZnjDZncKf0000 | NCBI478 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| Y0njmKcpGYhkWpC40000 | NCBI524 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| AgllF8z5fo8iyZbt0000 | NCBI523 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| 60U29Be78Hbq6aKX0000 | NCBI480 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| fcz3CZE9zkeOoILf0000 | NCBI517 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| GW0FrGHHYC29jhhq0000 | MEND38 | Visium | 10.1016/j.cell.2020.05.039 ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| wFGlr0E8ma0JOSda0000 | NCBI495 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| vrbiSOii5BcBkM3f0000 | NCBI504 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| USx288NLowiqKbV30000 | NCBI466 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| 3oyhCT3C7bDpeBxC0000 | NCBI506 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| pqFUrdtS5lPu686T0000 | NCBI516 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| 2KBVVl4aVjRqy8Ik0000 | NCBI515 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| YDFo6aE6lx657Vbe0000 | NCBI484 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| aSNAf508OCV8Aa9L0000 | NCBI482 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| uOkwZyogeULwkR6T0000 | NCBI475 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| hUpBl9SD0EA4UsTc0000 | NCBI461 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| TTN6SGnU8JgTphmp0000 | NCBI526 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| H5F5qrvnv6OikS980000 | NCBI492 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| aQuBSjS4omnPLt0O0000 | NCBI490 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| QCsHQtZNX3icnr1J0000 | NCBI494 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| Jp1cVLhBGevFUzxO0000 | NCBI510 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| 02Og8NVAa41JDFhi0000 | NCBI467 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| jtdBIAKz1Z5zImXz0000 | NCBI460 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| HiSO1d9AuNez97tT0000 | NCBI470 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| 9tcgkgef2K3OtHEj0000 | NCBI487 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| B1qYORvhDUDz2tkB0000 | NCBI488 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| AIweuhdjOuc4acTK0000 | NCBI493 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| ETRJDMopcl8qZCAb0000 | NCBI521 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| lYMZtFpcJbilQiqS0000 | MEND40 | Visium | 10.1016/j.cell.2020.05.039 ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| pibNOUb3tsaBJPaC0000 | NCBI472 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| 7d6mnIKRHqc7O7rj0000 | NCBI498 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| amu29Wswo3gTZwya0000 | NCBI479 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| SpHyjjnMwGOEy1H20000 | MEND37 | Visium | 10.1016/j.cell.2020.05.039 ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| 4JffvGye7kR0C13N0000 | NCBI525 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| sFfan0IpZozZGwDu0000 | NCBI464 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| 9fTljBIsOVMXBuZU0000 | NCBI485 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| 1Lehzb5WV60DegjI0000 | NCBI471 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| QHMw8xKNUQgdU80B0000 | NCBI489 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| CNG4vwTZNPGGkwr50000 | GSM4565825 | Visium | 10.1016/j.cell.2020.05.039 ↗ | NCBI GEO policy | Kept |
| qtE30AuBhWsGVzXR0000 | NCBI496 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| AFivO2p0ckCNpNhZ0000 | NCBI509 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| 6BWwVQtms3hPQrSC0000 | NCBI518 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| YUTm0lnTHP7xbzAT0000 | NCBI477 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| 93651FFB4euDgo1E0000 | NCBI468 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| gAhuIKaIqRp7caD20000 | MEND39 | Visium | 10.1016/j.cell.2020.05.039 ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| pE2LuxoPTz8bfkDC0000 | NCBI463 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| JSRdp73yIXKXTPuN0000 | NCBI503 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| 7sKWMoHCM6kGAlax0000 | GSM9357158 | Xenium | 10.1172/jci.insight.198954 ↗ | NCBI GEO policy | Kept |
| dM9GDCr3p4AUiHRB0000 | GSM9357160 | Xenium | 10.1172/jci.insight.198954 ↗ | NCBI GEO policy | Kept |
| RvoMcStjyiPzWaEU0000 | GSM9357162 | Xenium | 10.1172/jci.insight.198954 ↗ | NCBI GEO policy | Kept |
| 5JdwbLfOgimfVN540000 | GSM9357164 | Xenium | 10.1172/jci.insight.198954 ↗ | NCBI GEO policy | Kept |
| kjmvUpe8qCmsXStZ0000 | GSM9357159 | Xenium | 10.1172/jci.insight.198954 ↗ | NCBI GEO policy | Kept |
| eXLlOrhIIfVxyUY70000 | GSM9357155 | Xenium | 10.1172/jci.insight.198954 ↗ | NCBI GEO policy | Kept |
| jnCpUQ99qOwYM2YF0000 | GSM9357161 | Xenium | 10.1172/jci.insight.198954 ↗ | NCBI GEO policy | Kept |
| AxrbL1y4QCsj8rv70000 | GSM9357163 | Xenium | 10.1172/jci.insight.198954 ↗ | NCBI GEO policy | Kept |
| 2BdUTSDvXHcXaKIL0000 | GSM9357156 | Xenium | 10.1172/jci.insight.198954 ↗ | NCBI GEO policy | Kept |
| AIqzQITSPgYIqpjJ0000 | GSM9357157 | Xenium | 10.1172/jci.insight.198954 ↗ | NCBI GEO policy | Kept |
| 8iF49EkrWlLIa4Kc0001 | GSM9338174 | Visium | 10.1172/jci.insight.198954 ↗ | CC BY 4.0 | Kept |
| j9OdIADfFYPfTTpt0001 | NCBI522 | Visium | 10.1038/s41467-022-35319-w ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| i0CmGN1fYoz93ubU0000 | GSM9031941 | Visium HD | 10.1016/j.jaci.2026.01.028 ↗ | NCBI GEO policy | Kept |
| CSPSlmuINB8Omplh0000 | GSM9031942 | Visium HD | 10.1016/j.jaci.2026.01.028 ↗ | NCBI GEO policy | Kept |
| 5ZiTXbXv8HsFlSCK0000 | GSM5531131 | Visium | 10.2337/db21-0830 ↗ | NCBI GEO policy | Kept |
| pRzLsOxsAAaY3Bcp0000 | GSM4565826 | Visium | 10.1016/j.cell.2020.05.039 ↗ | NCBI GEO policy | Kept |
| odo4iQvDVXRgkgIY0000 | GSM9022968 | Visium | 10.1158/0008-5472.CAN-25-2934 ↗ | NCBI GEO policy | Kept |
| Pg7sR8MKG4MZSmMh0000 | GSM9022972 | Visium | 10.1158/0008-5472.CAN-25-2934 ↗ | NCBI GEO policy | Kept |
| pVtVPDugIHlo8rF70000 | GSM10024481 | Visium | geo-gse346090 | NCBI GEO policy | Kept |
| spXMBn3quOwDSh000000 | GSM6177624 | Visium | 10.1038/s41588-022-01141-9 ↗ | NCBI GEO policy | Kept |
| dvxFks6J6ETOy03D0000 | GSM7983365 | Visium | 10.1016/j.xcrm.2024.101606 ↗ | NCBI GEO policy | Kept |
| ghOyD8U0vp5Xwxjc0000 | GSM7983359 | Visium | 10.1016/j.xcrm.2024.101606 ↗ | NCBI GEO policy | Kept |
| 4180WDxm8tFQpKha0000 | GSM8797974 | Visium | 10.1038/s41586-025-09370-8 ↗ | NCBI GEO policy | Kept |
| kIEAQjj38M0T4ZDJ0000 | GSM9022964 | Visium | 10.1158/0008-5472.CAN-25-2934 ↗ | NCBI GEO policy | Kept |
| RwdV5Ne7yb7Bqcgn0000 | GSM7983366 | Visium | 10.1016/j.xcrm.2024.101606 ↗ | NCBI GEO policy | Kept |
| pueCcjpiKMrc6VOk0000 | GSM4565823 | Visium | 10.1016/j.cell.2020.05.039 ↗ | NCBI GEO policy | Kept |
| YfaUsewq8L75JwUH0000 | GSM8797982 | Visium | 10.1038/s41586-025-09370-8 ↗ | NCBI GEO policy | Kept |
| PYBFVwV4KFDhiMPC0000 | GSM7657720 | Visium | 10.1016/j.crmeth.2024.100759 ↗ | NCBI GEO policy | Kept |
| tOFl1G8iV4Gjg1j40000 | GSM7983364 | Visium | 10.1016/j.xcrm.2024.101606 ↗ | NCBI GEO policy | Kept |
| lSOGq0mSSEZ8d4N00000 | GSM9022963 | Visium | 10.1158/0008-5472.CAN-25-2934 ↗ | NCBI GEO policy | Kept |
| U4HTkHq5RpU0NmBN0000 | GSM6177625 | Visium | 10.1038/s41588-022-01141-9 ↗ | NCBI GEO policy | Kept |
| E0VtOymTHL8Ak2LM0000 | GSM4565824 | Visium | 10.1016/j.cell.2020.05.039 ↗ | NCBI GEO policy | Kept |
| iyrJ3lvmwvDoMHSd0001 | GSM9483975 | Visium | 10.3389/fimmu.2026.1870524 ↗ | NCBI GEO policy | Kept |
| FgT7gtfizluOSn8w0000 | GSM9022970 | Visium | 10.1158/0008-5472.CAN-25-2934 ↗ | NCBI GEO policy | Kept |
| TSsaLnPQZg5JowIM0000 | GSM9368377 | Visium | 10.1186/s13287-026-05101-6 ↗ | NCBI GEO policy | Kept |
| SIQesiJIwoKGGaAz0000 | GSM9022973 | Visium | 10.1158/0008-5472.CAN-25-2934 ↗ | NCBI GEO policy | Kept |
| w2pA2JrsjtgNwXWC0000 | GSM8797977 | Visium | 10.1038/s41586-025-09370-8 ↗ | NCBI GEO policy | Kept |
| GINguXAk4qlWrziR0000 | GSM10024482 | Visium | geo-gse346090 | NCBI GEO policy | Kept |
| YTRS2J6byBSnZouy0001 | NCBI770 | Spatial Transcriptomics | 10.1016/j.cell.2020.05.039 ↗ | CC BY-NC-SA 4.0 (non-commercial) | Kept |
| 8zCtObCDm7XczVsc0000 | GSM8797978 | Visium | 10.1038/s41586-025-09370-8 ↗ | NCBI GEO policy | Kept |
| YIf99ADSlv4X0F5C0000 | GSM9060734 | Visium | 10.1136/jitc-2025-014030 ↗ | NCBI GEO policy | Kept |
| DmONhJw21WKVzlqk0001 | GSM8656736 | Visium | geo-gse283145 | NCBI GEO policy | Kept |
| 7FtBLOYRhc7dLyLf0000 | GSM8797979 | Visium | 10.1038/s41586-025-09370-8 ↗ | NCBI GEO policy | Kept |
| xvLe3hYcBG6kF7FN0000 | GSM8797973 | Visium | 10.1038/s41586-025-09370-8 ↗ | NCBI GEO policy | Kept |
| kFiU82EYgHQtz58T0000 | GSM9022971 | Visium | 10.1158/0008-5472.CAN-25-2934 ↗ | NCBI GEO policy | Kept |
| YwxIHGB4NsC6rC3Z0000 | GSM9022969 | Visium | 10.1158/0008-5472.CAN-25-2934 ↗ | NCBI GEO policy | Kept |
| YT0ORht9Ktr8cFJH0000 | GSM8797980 | Visium | 10.1038/s41586-025-09370-8 ↗ | NCBI GEO policy | Kept |
| wUAOXpdFjggaXy8X0000 | GSM9022966 | Visium | 10.1158/0008-5472.CAN-25-2934 ↗ | NCBI GEO policy | Kept |
| EU44i3ROwJKWcVDK0000 | GSM10024480 | Visium | geo-gse346090 | NCBI GEO policy | Kept |
| BQF1pCDX5hUZi1zC0000 | GSM9483974 | Visium | 10.3389/fimmu.2026.1870524 ↗ | NCBI GEO policy | Kept |
| 7a9oTsJbdsMWhb6T0000 | GSM9022965 | Visium | 10.1158/0008-5472.CAN-25-2934 ↗ | NCBI GEO policy | Kept |
| ODtVeb2CpVNHRd1N0000 | GSM9060735 | Visium | 10.1136/jitc-2025-014030 ↗ | NCBI GEO policy | Kept |
| 1Haj9pIFZeaHFPvN0000 | GSM10024484 | Visium | geo-gse346090 | NCBI GEO policy | Kept |
| kspZSdTlwnUYKrJ10000 | GSM9483972 | Visium | 10.3389/fimmu.2026.1870524 ↗ | NCBI GEO policy | Kept |
| IFQycmvT75TLBoN80000 | GSM9060733 | Visium | 10.1136/jitc-2025-014030 ↗ | NCBI GEO policy | Kept |
| wldMWskeCiucijND0001 | GSM8983043 | Visium | 10.1038/s41551-025-01479-5 ↗ | NCBI GEO policy | Kept |
| sYtvf8cIeYyceeXz0000 | GSM9483973 | Visium | 10.3389/fimmu.2026.1870524 ↗ | NCBI GEO policy | Kept |
| 5LcjNtONyCZ0G3c80000 | GSM10024483 | Visium | geo-gse346090 | NCBI GEO policy | Kept |
| A44PRHdHYf8ZKF8b0000 | GSM9368379 | Visium | 10.1186/s13287-026-05101-6 ↗ | NCBI GEO policy | Kept |
| yU0lOHNUcA4Venym0000 | GSM9368375 | Visium | 10.1186/s13287-026-05101-6 ↗ | NCBI GEO policy | Kept |
| L6LtkBrwVt5Y5qkm0000 | GSM8656737 | Visium | geo-gse283145 | NCBI GEO policy | Kept |
| 5hzzPVB4IBPiV2Ha0000 | GSM9368380 | Visium | 10.1186/s13287-026-05101-6 ↗ | NCBI GEO policy | Kept |
| iMoqDCcaiT2X9WM30000 | GSM8189303 | Visium | geo-gse263298 | NCBI GEO policy | Kept |
| jhUYkyeJyPOMkh790000 | GSM8189299 | Visium | geo-gse263298 | NCBI GEO policy | Kept |
| CS4t1a2gc9pLqyha0000 | GSM8189297 | Visium | geo-gse263298 | NCBI GEO policy | Kept |
| FDqiHwzUqvWGcX8n0000 | GSM8189294 | Visium | geo-gse263298 | NCBI GEO policy | Kept |
| o4Du7WZ76VKBI6As0000 | GSM7932819 | Visium | geo-gse249279 | NCBI GEO policy | Kept |
| nyV1oZ2PMvleAUcS0000 | GSM8734926 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| YG1pDCxcppdFTg650000 | GSM8189292 | Visium | geo-gse263298 | NCBI GEO policy | Kept |
| iZWFbEtltgdKvz1K0000 | GSM8804039 | Visium | geo-gse290027 | NCBI GEO policy | Kept |
| 0F3pfJxKJUD1Rvti0000 | GSM9079615 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| LCAXoD0ctWEYb92Y0001 | human-skin-data-xenium-human-multi-tissue-and-cancer-panel-1-standard__hskin-nondiseased-section-2-ffpe | Xenium | 10x Genomics demo datasets | CC BY 4.0 | Dropped: panel shares 56 genes with the rest of its technology |
| eUBJ6rGJyraRO2eN0000 | GSM8189302 | Visium | geo-gse263298 | NCBI GEO policy | Kept |
| YAQaY5xeiFyahJqy0000 | GSM9079612 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| OtQgNIuIv75Nhexu0000 | GSM9079633 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| bPfmaCokZYOe9clf0000 | GSM8576305 | Visium | geo-gse279576 | NCBI GEO policy | Kept |
| brS23RiGJBDL5SY50000 | GSM9079624 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| zP4mrVjugWwVzi8s0000 | GSM8734927 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| yJkswgwZedAf1Q5E0001 | human-skin-preview-data-xenium-human-skin-gene-expression-panel-1-standard | Xenium | CC BY 4.0 | Dropped: no paper (no study_id, series or collection) | |
| qIDeKej1HdhQi9vm0000 | GSM9451453 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| xuOaJp7taK9yEOve0000 | GSM9079619 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| S8m08QybULyCymbb0000 | GSM8189298 | Visium | geo-gse263298 | NCBI GEO policy | Kept |
| 3kate4Uz3RAGsC5l0000 | GSM9483980 | Visium | 10.3389/fimmu.2026.1870524 ↗ | NCBI GEO policy | Kept |
| iptmV7eDW7GsHUWj0000 | GSM9079617 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| qjXlm5zQPft4Nflc0000 | GSM9079630 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| IMyO1LowcFauuSGl0000 | GSM9079622 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| igOi45RRTtaWWwKy0000 | GSM9079629 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| 4q8aTFCtY7dGVh8z0000 | GSM9079632 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| jvZcJOyl3C6B7a2Q0000 | GSM8804028 | Visium | geo-gse290027 | NCBI GEO policy | Kept |
| cZUSXcqCood0xzxm0000 | GSM8804030 | Visium | geo-gse290027 | NCBI GEO policy | Kept |
| 7DwS93Y0xAoFkd1e0000 | GSM9451458 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| kfKJyJYl1xgM8U9L0000 | GSM8656735 | Visium | geo-gse283145 | NCBI GEO policy | Kept |
| bk3rVhQIJtUrwdTc0000 | GSM9451448 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| 9SxZ5tvxQGNA1yjE0000 | GSM9079610 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| BLlef0eIPDyMA9LW0000 | GSM8189295 | Visium | geo-gse263298 | NCBI GEO policy | Kept |
| FnhStaLbcPczbBBx0000 | GSM9451444 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| 2DrML2fUqgcYXyFn0000 | GSM9451455 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| r7Qsli06HAa1OEPo0000 | GSM8189300 | Visium | geo-gse263298 | NCBI GEO policy | Kept |
| BoczOCdYcz6pMlcX0000 | GSM7932817 | Visium | geo-gse249279 | NCBI GEO policy | Kept |
| cDOrjRgxXpgqMSXU0000 | GSM8189296 | Visium | geo-gse263298 | NCBI GEO policy | Kept |
| HGLfHr3UQARyvI0F0000 | GSM9451441 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| nFHrPUqhhJDlU1vk0000 | GSM8804034 | Visium | geo-gse290027 | NCBI GEO policy | Kept |
| iu2I2SnNFkB9WdCD0000 | GSM9451450 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| ZEQyUc7uGXMBrn7S0000 | GSM9769921 | Visium | geo-gse333617 | NCBI GEO policy | Kept |
| dz6l8DWhxqELwd7A0000 | GSM8804037 | Visium | geo-gse290027 | NCBI GEO policy | Kept |
| mQ88AJXq7kUcM0Xr0000 | GSM8804035 | Visium | geo-gse290027 | NCBI GEO policy | Kept |
| zJI63TcbTlkIJsKY0000 | GSM9902815 | Xenium | geo-gse341250 | NCBI GEO policy | Kept |
| pBLPikFm2hQ3Qgde0000 | GSM9902814 | Xenium | geo-gse341250 | NCBI GEO policy | Kept |
| CzYmhcW5KzyeDwkB0000 | GSM7932820 | Visium | geo-gse249279 | NCBI GEO policy | Kept |
| QarbydlcHB0Jp5Jk0000 | GSM8189293 | Visium | geo-gse263298 | NCBI GEO policy | Kept |
| 26Fo6iDsILpxQ0MX0000 | GSM9636817 | Xenium | 10.1126/scitranslmed.aea8773 ↗ | NCBI GEO policy | Dropped: panel would reduce 155 shared genes to 61 |
| gHOpZTOsGPHECkuK0000 | GSM9636818 | Xenium | 10.1126/scitranslmed.aea8773 ↗ | NCBI GEO policy | Dropped: panel would reduce 155 shared genes to 61 |
| dLr5ilYTFG2OOgbZ0000 | GSM8576302 | Visium | geo-gse279576 | NCBI GEO policy | Kept |
| 6WtVxAPx8uTSisMR0000 | GSM9483981 | Visium | 10.3389/fimmu.2026.1870524 ↗ | NCBI GEO policy | Kept |
| xtDmwclBHTxHMlJx0000 | GSM8804038 | Visium | geo-gse290027 | NCBI GEO policy | Kept |
| liTd2WDxWQKPm37T0000 | GSM8804031 | Visium | geo-gse290027 | NCBI GEO policy | Kept |
| OeB8RQBwghLV5dFF0000 | GSM8804036 | Visium | geo-gse290027 | NCBI GEO policy | Kept |
| QSaFwvDu4F0NtUYu0000 | GSM8804029 | Visium | geo-gse290027 | NCBI GEO policy | Kept |
| HqYHalDGGZNTcsP70000 | GSM8797983 | Visium | 10.1038/s41586-025-09370-8 ↗ | NCBI GEO policy | Kept |
| 2n9BpkK6JkPPHvba0002 | xenium-prime-ffpe-human-skin | Xenium | CC BY 4.0 | Dropped: no paper (no study_id, series or collection) | |
| y0eYODAHRDVnFbvx0001 | human-skin-preview-data-xenium-human-skin-gene-expression-panel-add-on-1-standard | Xenium | CC BY 4.0 | Dropped: no paper (no study_id, series or collection) | |
| uVFIWy2l86B79F700000 | GSM9079628 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| uy1Bw4QplzKfkNue0000 | GSM8804032 | Visium | geo-gse290027 | NCBI GEO policy | Kept |
| nceJKOdo07khx69z0000 | GSM9816491 | Xenium | 10.1111/all.70493 ↗ | NCBI GEO policy | Kept |
| yY3XV9HxnHqU3ZC30001 | human-skin-data-xenium-human-multi-tissue-and-cancer-panel-1-standard__hskin-nondiseased-section-1-ffpe | Xenium | 10x Genomics demo datasets | CC BY 4.0 | Dropped: panel shares 56 genes with the rest of its technology |
| gHPxDFuXad0MP9BP0000 | GSM9483979 | Visium | 10.3389/fimmu.2026.1870524 ↗ | NCBI GEO policy | Kept |
| NIkmqFKMyVDS510k0000 | GSM9451454 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| OwUSceHzXsYbDOr40000 | GSM9451459 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| F3TYCUDjnPeIe1M90000 | GSM8189301 | Visium | geo-gse263298 | NCBI GEO policy | Kept |
| DVxzXnoTI9fTcTJr0000 | GSM9451447 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| ZtDIwq7yrSGi9Sni0000 | GSM8797976 | Visium | 10.1038/s41586-025-09370-8 ↗ | NCBI GEO policy | Kept |
| 5Dms9xtJ8sZsBB5W0000 | GSM9334384 | Visium | 10.1158/2159-8290.CD-24-1853 ↗ | NCBI GEO policy | Kept |
| Bfx67JT3ppxrpVUr0000 | GSM9079613 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| eApEdW8CROyfkZdg0000 | GSM9079616 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| Km7Y8x7YVF6rzNuV0000 | GSM7932818 | Visium | geo-gse249279 | NCBI GEO policy | Kept |
| C49u2RegBEsa7P5H0000 | GSM9483976 | Visium | 10.3389/fimmu.2026.1870524 ↗ | NCBI GEO policy | Kept |
| dhm8o9ZTHVNUtDtH0000 | GSM8983044 | Visium | 10.1038/s41551-025-01479-5 ↗ | NCBI GEO policy | Kept |
| aN3Z8JeMjRT9nADm0000 | GSM9368374 | Visium | 10.1186/s13287-026-05101-6 ↗ | NCBI GEO policy | Kept |
| aomaqzhnDzLFEHLv0000 | GSM9079618 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| imFqKEVpNMpXrMe70000 | GSM9079625 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| YD6KlyV8KNjFmZ1u0000 | GSM9334385 | Visium | 10.1158/2159-8290.CD-24-1853 ↗ | NCBI GEO policy | Kept |
| GM0QD5LBaZGDkKZ30000 | GSM8804033 | Visium | geo-gse290027 | NCBI GEO policy | Kept |
| ydF7XXLo2DbDRjDm0000 | GSM9451456 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| XGmw508HsLl5dnGO0000 | GSM9022967 | Visium | 10.1158/0008-5472.CAN-25-2934 ↗ | NCBI GEO policy | Kept |
| CCA4l3OD2iZfYzlq0000 | GSM9079621 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| e0MbA3SQd7a0OWFQ0000 | GSM9451460 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| LdeKmdZkygSqNla20000 | GSM9079631 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| iuuD0pdlDvgCp64V0000 | GSM8797981 | Visium | 10.1038/s41586-025-09370-8 ↗ | NCBI GEO policy | Kept |
| ftyyHL5E4FqKwfXw0000 | GSM9368376 | Visium | 10.1186/s13287-026-05101-6 ↗ | NCBI GEO policy | Kept |
| wu2hTkZzsbKLu57c0000 | GSM9451445 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| SfnTC51gYbitNwFn0000 | GSM9079611 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| g493WoTLEjvn7YRl0000 | GSM9079620 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| cTACJdXquDt5HGuz0000 | GSM9451442 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| 4CXhOpwLkha3BZhI0000 | S-BIAD2376:202402221100_D151-1-6--fullrun--rerun--02222024_VMSC02301:region_1 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| BVgGSKKs70ZQu8wj0000 | S-BIAD2376:202403121435_D107--1-6--03122024_VMSC02301:region_1 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| w8it4AixI9RORQz20000 | S-BIAD2376:202404301517_D149--7-12--04302024_VMSC02301:region_0 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| 4Zl5j0yhKHg6Uu2x0000 | S-BIAD2376:202403121435_D107--1-6--03122024_VMSC02301:region_0 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| bs7zBvjus9vKXO2t0000 | GSM9079623 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| URjEreAb3bHvfOCc0000 | S-BIAD2376:202403151059_D151--7-12--03152024_VMSC02301:region_5 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| uy7MguK6xx8jR2su0000 | S-BIAD2376:202407031037_D134-D173--OTR-NS--07032024_VMSC02301:region_2 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| KV6FvWXiIEtEtlFC0000 | S-BIAD2376:202403211122_D083--1-6-032124_VMSC02301:region_5 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| XI4N2Gjr68ttaesG0000 | S-BIAD2376:202312180956_D077--5-8--12182023_VMSC02301:region_3 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| FfGk0vCxM9Rhutg40000 | S-BIAD2376:202403211122_D083--1-6-032124_VMSC02301:region_2 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| fOBZIVYv7KzLdkC80000 | S-BIAD2376:202403151059_D151--7-12--03152024_VMSC02301:region_0 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| jY60f1yfmZTIdn650000 | S-BIAD2376:202405081011_D082--4-12--05082024_VMSC02301:region_1 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| Ze73gwXCrTex81rz0000 | S-BIAD2376:202405081011_D082--4-12--05082024_VMSC02301:region_2 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| yG8s7Y0LO6Clk4pt0000 | S-BIAD2376:202405111530_D077--6-12--05112024_VMSC02301:region_2 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| NaXU4hPhf5Jvov8n0000 | GSM9451457 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| tPDkJydZIlUff8wD0000 | S-BIAD2376:202403281041_D145--1-6--03282024_VMSC02301:region_0 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| E4cue3F1wJfsI2zs0000 | S-BIAD2376:202403211122_D083--1-6-032124_VMSC02301:region_1 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| JlT4p4dlKw4hBwTF0000 | S-BIAD2376:202403211122_D083--1-6-032124_VMSC02301:region_0 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| YfpLYEXGXCv2M6wv0000 | S-BIAD2376:202403281041_D145--1-6--03282024_VMSC02301:region_2 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| 54GPTf4vK5D4GTUr0000 | S-BIAD2376:202405141034_D149--1-6--rerun--05142024_VMSC02301:region_5 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| KMfLDTyLvE8JjRMv0000 | S-BIAD2376:202312180956_D077--5-8--12182023_VMSC02301:region_1 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| HluwrJCJx1VyJNUM0000 | S-BIAD2376:202404151153_Panniculectomy--D048-D142---04152024_VMSC02301:region_5 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| ZHnmqAgIk68pfNer0000 | S-BIAD2376:202312180956_D077--5-8--12182023_VMSC02301:region_0 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| TFaYWWC6Z8BYgJcZ0000 | S-BIAD2376:202407031037_D134-D173--OTR-NS--07032024_VMSC02301:region_4 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| 7JpP95jcAroWjYL90000 | S-BIAD2376:202405111530_D077--6-12--05112024_VMSC02301:region_5 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| tvjxBjMmomZlsB5z0000 | S-BIAD2376:202403151059_D151--7-12--03152024_VMSC02301:region_4 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| IieMircsBb3qdWcl0000 | S-BIAD2376:202403151059_D151--7-12--03152024_VMSC02301:region_2 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| nr8fUCQT2nCqAaep0000 | S-BIAD2376:202304141439_MSSM-Ji-Skin2-VA227_VMSC02701:region_0 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| nHC4a8TSbEF048SF0000 | S-BIAD2376:202312180956_D077--5-8--12182023_VMSC02301:region_2 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| 6Z1QAvoyg0VVBAmd0000 | GSM9079627 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| Ou9f5lkoyRrjnhP90000 | S-BIAD2376:202402221100_D151-1-6--fullrun--rerun--02222024_VMSC02301:region_2 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| 3nmLnW34UMnRMhCN0000 | S-BIAD2376:202407031037_D134-D173--OTR-NS--07032024_VMSC02301:region_3 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| 5gzuMIpvyJFHY01V0000 | S-BIAD2376:202311011251_D082--5-8--11012023_VMSC02301:region_0 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| isfvGrtVXaQE44zB0000 | S-BIAD2376:202404151153_Panniculectomy--D048-D142---04152024_VMSC02301:region_3 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| Eu7dW3hWq6kxWDHJ0000 | S-BIAD2376:202403281041_D145--1-6--03282024_VMSC02301:region_1 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| blHGrBQGXkrEqkoD0000 | S-BIAD2376:202312131041_D077--1-4--12132023_VMSC02301:region_0 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| dWP7PtLxHMlPB5De0000 | S-BIAD2376:202403211122_D083--1-6-032124_VMSC02301:region_3 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| yr83FMrgCggrRR5W0000 | S-BIAD2376:202404301517_D149--7-12--04302024_VMSC02301:region_5 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| 2bUcGpI7MlTi8g7O0000 | S-BIAD2376:202403180949_D107--7-12--03182024_VMSC02301:region_3 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| Y7tgbrpEhjaMWVeQ0000 | S-BIAD2376:202405111530_D077--6-12--05112024_VMSC02301:region_3 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| CLHaMNNhCEgYWcPr0000 | S-BIAD2376:202304121534_MSSM-Ji-Skin3-VA227_VMSC02701:region_0 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| K5R9dRvxsWmxW1vp0000 | S-BIAD2376:202405141034_D149--1-6--rerun--05142024_VMSC02301:region_0 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| q2WCEmqeq0Rr0NVg0000 | S-BIAD2376:202404041030_D165--1-6--04042024_VMSC02301:region_2 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| LMpxcGRKx7S4sEU40000 | S-BIAD2376:202402221100_D151-1-6--fullrun--rerun--02222024_VMSC02301:region_5 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| 2Y6du4yF7w0cmIZm0000 | S-BIAD2376:202310301133_D082--1-4--10302023_VMSC02301:region_0 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| 3oypa4bw1uwJkv2V0000 | S-BIAD2376:202402221100_D151-1-6--fullrun--rerun--02222024_VMSC02301:region_0 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| t6UbUpO4E6WdJPMP0000 | S-BIAD2376:202403121435_D107--1-6--03122024_VMSC02301:region_4 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| bbvvDuQwKnpLHlVH0000 | S-BIAD2376:202404111130_D145--7-12--04112024_VMSC02301:region_3 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| aKd0rXGIC5fd8S7A0000 | S-BIAD2376:202309281027_AutopsyBFFPE092823_VMSC02301:region_3 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| 8qGw2Ao6IUYa1v9P0000 | S-BIAD2376:202404301517_D149--7-12--04302024_VMSC02301:region_4 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| hTnQN6Gqt0nwJzOw0000 | S-BIAD2376:202311011251_D082--5-8--11012023_VMSC02301:region_3 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| lpxwEE0N1wAbXoFl0000 | S-BIAD2376:202405141034_D149--1-6--rerun--05142024_VMSC02301:region_3 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| ySHxtZGcFaEpbWoE0000 | S-BIAD2376:202405111530_D077--6-12--05112024_VMSC02301:region_4 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| 71lzSrlSomeeAwqn0000 | S-BIAD2376:202405141034_D149--1-6--rerun--05142024_VMSC02301:region_4 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| Ejjy1K9dFiEaRKuI0000 | S-BIAD2376:202404301517_D149--7-12--04302024_VMSC02301:region_3 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| E4CoypK4WyrKttwr0000 | S-BIAD2376:202405081011_D082--4-12--05082024_VMSC02301:region_4 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| hRpbkBSMiJiFpQy00000 | S-BIAD2376:202311011251_D082--5-8--11012023_VMSC02301:region_1 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| 12PuAQ6VuVNF5UIt0000 | S-BIAD2376:202404241001_D165--7-12--04242024_VMSC02301:region_2 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| y6FCBD7gQsPVghYH0000 | S-BIAD2376:202404041030_D165--1-6--04042024_VMSC02301:region_3 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| iE5IC24AgiHRXprB0000 | S-BIAD2376:202404151153_Panniculectomy--D048-D142---04152024_VMSC02301:region_4 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| orduE3IGm3wJ22dy0000 | S-BIAD2376:202404151153_Panniculectomy--D048-D142---04152024_VMSC02301:region_1 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| H6ATHoqBYPMztWmH0000 | GSM9079626 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| 2eSfSjWRg0PJ7vRA0000 | S-BIAD2376:202403121435_D107--1-6--03122024_VMSC02301:region_5 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| G7aQjqqgTIlVI5dO0000 | S-BIAD2376:202404241001_D165--7-12--04242024_VMSC02301:region_4 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| aMsCTDOadSRqjg0B0000 | S-BIAD2376:202404241001_D165--7-12--04242024_VMSC02301:region_3 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| jFXiHtUuVTispYXg0000 | S-BIAD2376:202405111530_D077--6-12--05112024_VMSC02301:region_1 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| bfGS5uVhtrsFezon0000 | S-BIAD2376:202407031037_D134-D173--OTR-NS--07032024_VMSC02301:region_5 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| QCMoNGXP2sPITSUs0000 | S-BIAD2376:202403180949_D107--7-12--03182024_VMSC02301:region_0 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| IKS9Xi2QtyV9njFr0000 | S-BIAD2376:202306070957_AH21-NSFFPE-060723-AH_VMSC02301:region_0 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| xVfe1VgtpyIf9PVF0000 | S-BIAD2376:202404041030_D165--1-6--04042024_VMSC02301:region_0 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| RKBLj1grvNDP0obW0000 | S-BIAD2376:202404301517_D149--7-12--04302024_VMSC02301:region_1 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| i6ghPXL40AwBULZe0000 | S-BIAD2376:202309281027_AutopsyBFFPE092823_VMSC02301:region_2 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| An5mDP3dXtJy80Wn0000 | S-BIAD2376:202402221100_D151-1-6--fullrun--rerun--02222024_VMSC02301:region_4 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| r1vlggsauqVUFw9j0000 | S-BIAD2376:202407031037_D134-D173--OTR-NS--07032024_VMSC02301:region_1 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| AvaN7RcxS8tpuKoq0000 | S-BIAD2376:202404041030_D165--1-6--04042024_VMSC02301:region_4 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| 9NuVOP1aPEDDGHXB0000 | GSM9251640 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| UJjNSjOoUZMjnPIv0000 | S-BIAD2376:202403180949_D107--7-12--03182024_VMSC02301:region_5 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| alUVZVMEQtfUNUDs0000 | S-BIAD2376:202405081011_D082--4-12--05082024_VMSC02301:region_0 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| xS6gVVaF65nNlGp70000 | S-BIAD2376:202404151153_Panniculectomy--D048-D142---04152024_VMSC02301:region_2 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| JkI0HbX3ERCudrXO0000 | S-BIAD2376:202310301133_D082--1-4--10302023_VMSC02301:region_3 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| dWWGuCpLd2nayock0000 | S-BIAD2376:202403180949_D107--7-12--03182024_VMSC02301:region_4 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| Rq6aPrMH1wzsCWfJ0000 | GSM9251639 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| 2pduPAtq3nSKFf3K0000 | S-BIAD2376:202404241001_D165--7-12--04242024_VMSC02301:region_5 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| GXsMCtpIMHOUhUh90000 | S-BIAD2376:202403211122_D083--1-6-032124_VMSC02301:region_4 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| HqbnjVgqfUdVokGm0000 | GSM9251641 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| 6J9LmcHRONBM7lSg0000 | S-BIAD2376:202404041030_D165--1-6--04042024_VMSC02301:region_5 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| GrqeyM83972Q0MlN0000 | S-BIAD2376:202404111130_D145--7-12--04112024_VMSC02301:region_2 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| rDuNmfzblSDZMJ7U0000 | S-BIAD2376:202404111130_D145--7-12--04112024_VMSC02301:region_5 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| ErgTR0eY3WekBq3S0000 | S-BIAD2376:202404041030_D165--1-6--04042024_VMSC02301:region_1 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| HAfWHZNOROJBzLNn0000 | S-BIAD2376:202403121435_D107--1-6--03122024_VMSC02301:region_2 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| 71dclOe1tH9eVsBe0000 | S-BIAD2376:202403180949_D107--7-12--03182024_VMSC02301:region_1 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| sLKfYIhzZNVEru8h0000 | S-BIAD2376:202403180949_D107--7-12--03182024_VMSC02301:region_2 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| pxrLlv5lNG2zYXpa0000 | S-BIAD2376:202404151153_Panniculectomy--D048-D142---04152024_VMSC02301:region_0 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| KlDRFi5qdbwHtAIZ0000 | S-BIAD2376:202407031037_D134-D173--OTR-NS--07032024_VMSC02301:region_0 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| k5FTl51onpxLwhxV0000 | S-BIAD2376:202404241001_D165--7-12--04242024_VMSC02301:region_0 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| 2OriOLcxfKHB3Z6F0000 | S-BIAD2376:202312131041_D077--1-4--12132023_VMSC02301:region_2 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| Bsz3z39HHcBsBt6t0000 | S-BIAD2376:202310301133_D082--1-4--10302023_VMSC02301:region_2 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| MdiDSlK3jg2Ugo3K0000 | GSM9251642 | Xenium | NCBI GEO policy | Dropped: no paper (no study_id, series or collection) | |
| NwIVN2EUi1Dcy5j40000 | S-BIAD2376:202402221100_D151-1-6--fullrun--rerun--02222024_VMSC02301:region_3 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| Rd69N6TQtHkbrNEt0000 | S-BIAD2376:202403281041_D145--1-6--03282024_VMSC02301:region_5 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| JstJdYG1Sa2oYKzG0000 | S-BIAD2376:202403151059_D151--7-12--03152024_VMSC02301:region_1 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| 4VUrMOJXAIJmGZ5e0000 | S-BIAD2376:202404301517_D149--7-12--04302024_VMSC02301:region_2 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| HbUWAw8Zvw2M6DfV0000 | S-BIAD2376:202404111130_D145--7-12--04112024_VMSC02301:region_4 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| A5bIVjZBFTg8LdJZ0000 | S-BIAD2376:202403121435_D107--1-6--03122024_VMSC02301:region_3 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| xDMiQGMcsWcfgG1B0000 | S-BIAD2376:202403151059_D151--7-12--03152024_VMSC02301:region_3 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| 1B6vqoTtqFxOaeFw0000 | S-BIAD2376:202311011251_D082--5-8--11012023_VMSC02301:region_2 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| f2wTdERzPZlD4RlG0000 | S-BIAD2376:202309281027_AutopsyBFFPE092823_VMSC02301:region_0 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| nmg6gHw8g49EicXS0000 | S-BIAD2376:202405141034_D149--1-6--rerun--05142024_VMSC02301:region_2 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| MLEJaYYGATFqhW2H0000 | S-BIAD2376:202306121431_AH21-NS-ConcClear-061223_VMSC02301:region_0 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| PwcxeOhf4yaGXEZm0000 | S-BIAD2376:202310301133_D082--1-4--10302023_VMSC02301:region_1 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| VvtP72YlyAJmsWfP0000 | S-BIAD2376:202404111130_D145--7-12--04112024_VMSC02301:region_0 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| hiMyk7U7XBNY8oax0000 | S-BIAD2376:202312131041_D077--1-4--12132023_VMSC02301:region_3 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| fakLUSTa0B85qbxh0000 | S-BIAD2376:202312131041_D077--1-4--12132023_VMSC02301:region_1 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
| e3Nb0KbsATPoXWGO0000 | S-BIAD2376:202403281041_D145--1-6--03282024_VMSC02301:region_3 | MERSCOPE | 10.1038/s41588-026-02552-8 ↗ | CC BY 4.0 | Kept |
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| View | Labels | Statistic | Before Harmony | After Harmony | Shuffled labels |
|---|---|---|---|---|---|
| Spot | Section | Entropy | 0.30 | 0.59 | 0.93 |
| Other share | 0.44 | 0.74 | 0.95 | ||
| Paper | Entropy | 0.08 | 0.35 | 0.77 | |
| Other share | 0.13 | 0.51 | 0.89 | ||
| imaging_cell:Xenium | Section | Entropy | 0.37 | 0.48 | 0.74 |
| Other share | 0.50 | 0.56 | 0.81 | ||
| Paper | Entropy | 0.20 | 0.46 | 0.88 | |
| Other share | 0.12 | 0.29 | 0.59 | ||
| imaging_cell:Merscope | Section | Entropy | 0.63 | 0.76 | 0.89 |
| Other share | 0.77 | 0.88 | 0.94 | ||
| Paper | Not applicable: one paper. | ||||
- Entropy
- How evenly the block labels are spread among each observation's 30 nearest neighbours, divided by log(min(30, number of labels)): 0 when all neighbours share one label, 1 when the labels are as evenly spread as the neighbours allow.
- Other share
- The share of each observation's 30 nearest neighbours that carry another block.
- Shuffled labels
- The same statistic with the labels shuffled over the same neighbour graph: the value a fully mixed embedding would reach.
Section rows use the dataset_uid labels; paper and technology rows use those labels in the same way.
Well mixed is not the same as biologically right: a correction can also mix cells that differ for a real reason, such as tissue or disease.
Computed with spatialdata-db 0.1.3, scanpy 1.12.5, anndata 0.13.4, spatialdata 0.8.0, spatialdata-plot 0.4.2, rapids-singlecell-cu13 0.18.1 on NVIDIA B300 SXM6 AC in 1286 s, seed 0.