10x Xenium
Human skin of body
GSM9079618
silver Interactive viewer acne No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 17194, 17248), (1, 8597, 8624), (1, 4298, 4312), (1, 2149, 2156), (1, 1074, 1078)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (16759, 16205), (8379, 8102), (4189, 4051), (2094, 2025), (1047, 1012)
│ └── 'nucleus_labels': DataTree[yx] (16619, 16065), (8309, 8032), (4154, 4016), (2077, 2008), (1038, 1004)
├── Points
│ └── 'transcripts': DataFrame with shape: (892023, 10) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (19931, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (19931, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (19931, 1) (2D shapes)
└── Tables
└── 'table': AnnData (19931, 100)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("aomaqzhnDzLFEHLv0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("aomaqzhnDzLFEHLv") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download aomaqzhnDzLFEHLv0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/aomaqzhnDzLFEHLv
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid aomaqzhnDzLFEHLvLicense: NCBI GEO policy
Metadata
- Technology
- 10x Xenium
- Organism
- human
- Tissue
- skin of body
- Condition
- acne
- Modality
- RNA
- Observations (cells)
- 19,931
- Transcripts
- 892,023
- Tier
- silver
- Size
- 306 MB
- Sample ID
- GSM9079618
- License
- NCBI GEO policy
- Published
- Dec 3, 2025
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB