10x Xenium
Human skin of body
GSM9251639
silver Interactive viewer drug allergy No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 20484, 22790), (1, 10242, 11395), (1, 5121, 5697), (1, 2560, 2848), (1, 1280, 1424)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (19276, 20061), (9638, 10030), (4819, 5015), (2409, 2507), (1204, 1253)
│ └── 'nucleus_labels': DataTree[yx] (19252, 20034), (9626, 10017), (4813, 5008), (2406, 2504), (1203, 1252)
├── Points
│ └── 'transcripts': DataFrame with shape: (18328976, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (20879, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (20879, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (20535, 2) (2D shapes)
└── Tables
└── 'table': AnnData (20879, 5101)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("Rq6aPrMH1wzsCWfJ0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("Rq6aPrMH1wzsCWfJ") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download Rq6aPrMH1wzsCWfJ0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/Rq6aPrMH1wzsCWfJ
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid Rq6aPrMH1wzsCWfJLicense: NCBI GEO policy
Metadata
- Technology
- 10x Xenium
- Organism
- human
- Tissue
- skin of body
- Condition
- drug allergy
- Modality
- RNA
- Observations (cells)
- 20,879
- Transcripts
- 18,328,976
- Tier
- silver
- Size
- 814 MB
- Sample ID
- GSM9251639
- License
- NCBI GEO policy
- Published
- Aug 24, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB