Visium
Human skin of body
GSM9334385
bronze Interactive viewer H&E cutaneous melanoma Provisional
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM9334385_AM711_hires_image': DataArray[cyx] (3, 2000, 2000)
│ └── 'GSM9334385_AM711_lowres_image': DataArray[cyx] (3, 600, 600)
├── Shapes
│ └── 'GSM9334385_AM711': GeoDataFrame shape: (4795, 2) (2D shapes)
└── Tables
└── 'table': AnnData (4795, 18085)
with coordinate systems:
▸ 'GSM9334385_AM711', with elements:
GSM9334385_AM711_hires_image (Images), GSM9334385_AM711_lowres_image (Images), GSM9334385_AM711 (Shapes)
▸ 'GSM9334385_AM711_downscaled_hires', with elements:
GSM9334385_AM711_hires_image (Images), GSM9334385_AM711 (Shapes)
▸ 'GSM9334385_AM711_downscaled_lowres', with elements:
GSM9334385_AM711_lowres_image (Images), GSM9334385_AM711 (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("YD6KlyV8KNjFmZ1u0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("YD6KlyV8KNjFmZ1u") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download YD6KlyV8KNjFmZ1u0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/YD6KlyV8KNjFmZ1u
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid YD6KlyV8KNjFmZ1uLicense: NCBI GEO policy
Part of collection
A targetable developmental program co-regulates angiogenesis and immune evasion [Spatial Transcriptomics]→ 2 datasets · other
Metadata
- Technology
- Visium
- Organism
- human
- Tissue
- skin of body
- Condition
- cutaneous melanoma
- Modality
- RNA
- Observations (spots)
- 4,795
- Tier
- bronze
- Chemistry
- Visium v1
- Resolution
- 2,000 × 2,000 px
- mpp
- 3.108 µm/px
- Size
- 133 MB
- Sample ID
- GSM9334385
- License
- NCBI GEO policy
- Published
- Dec 3, 2025
Cite this dataset
doi.org/10.1158/2159-8290.CD-24-1853 ↗ BibTeX
@article{geo:GSM9334385,
doi = {10.1158/2159-8290.CD-24-1853},
title = {GSM9334385},
year = {2026}
}Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB