Collections / bia-s-biad2557

bia-s-biad2557

Datasets25
Size~80.5 GB
AssayMIBI-TOF
Samplemouse · liver
KindPublication
Flag a data issue
10.64898/2026.03.24.711280 ↗
Python · sddb client
from sddb import Catalog

cohort = Catalog().collection("bia-s-biad2557")
cohort.members        # the 25 datasets as a table

print(cohort.licenses())              # check the terms before you download

sdatas = cohort.to_dict()             # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/")
Python · lamindb

Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.

import lamindb as ln

db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="bia-s-biad2557")
coll.ordered_artifacts.to_dataframe()   # the 25 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
Shell
# sddb client: download every member .zarr into data/
sddb-cli download --collection bia-s-biad2557 --dest data/

Licenses: 25 CC BY 4.0

Cell-of-Origin, not Oncogenic Effect, Determines Desmoplastic Immune Exclusion in KRAS-Driven Liver Cancer

Read the abstract at the source →
MIBI-TOF
Mouse liver
S-BIAD2557:CSL106:slide2-B1
mouse liver 318 MB 1,493 cells bronze
TechnologyMIBI-TOF
Organismmouse
Tissueliver
Size318 MB
Cells1,493
bronze
MIBI-TOF
Mouse liver
S-BIAD2557:CSL073:slide3-C1
mouse liver 287 MB 1,476 cells bronze
TechnologyMIBI-TOF
Organismmouse
Tissueliver
Size287 MB
Cells1,476
bronze
MIBI-TOF
Mouse liver
S-BIAD2557:CSL021:slide1-D2
mouse liver 287 MB 1,399 cells bronze
TechnologyMIBI-TOF
Organismmouse
Tissueliver
Size287 MB
Cells1,399
bronze
MIBI-TOF
Mouse liver
S-BIAD2557:CSL101:slide2-C1
mouse liver 316 MB 1,454 cells bronze
TechnologyMIBI-TOF
Organismmouse
Tissueliver
Size316 MB
Cells1,454
bronze
MIBI-TOF
Mouse liver
S-BIAD2557:CSL029:slide3-D2
mouse liver 310 MB 1,329 cells bronze
TechnologyMIBI-TOF
Organismmouse
Tissueliver
Size310 MB
Cells1,329
bronze
MIBI-TOF
Mouse liver
S-BIAD2557:CSL077:slide3-A1
mouse liver 317 MB 1,244 cells bronze
TechnologyMIBI-TOF
Organismmouse
Tissueliver
Size317 MB
Cells1,244
bronze
MIBI-TOF
Mouse liver
S-BIAD2557:CSL082:slide1-E2
mouse liver 316 MB 1,279 cells bronze
TechnologyMIBI-TOF
Organismmouse
Tissueliver
Size316 MB
Cells1,279
bronze
MIBI-TOF
Mouse liver
S-BIAD2557:NL006:slide4-C2
mouse liver intrahepatic cholangiocarcinoma 2.0 GB 15,066 cells bronze
TechnologyMIBI-TOF
Organismmouse
Tissueliver
Conditionintrahepatic cholangiocarcinoma
Size2.0 GB
Cells15,066
bronze
MIBI-TOF
Mouse liver
S-BIAD2557:NL015:slide4-A1
mouse liver intrahepatic cholangiocarcinoma 2.5 GB 16,810 cells bronze
TechnologyMIBI-TOF
Organismmouse
Tissueliver
Conditionintrahepatic cholangiocarcinoma
Size2.5 GB
Cells16,810
bronze
MIBI-TOF
Mouse liver
S-BIAD2557:NL013:slide4-B1
mouse liver intrahepatic cholangiocarcinoma 4.6 GB 36,112 cells bronze
TechnologyMIBI-TOF
Organismmouse
Tissueliver
Conditionintrahepatic cholangiocarcinoma
Size4.6 GB
Cells36,112
bronze
MIBI-TOF
Mouse liver
S-BIAD2557:CSL073:slide3-C2
mouse liver intrahepatic cholangiocarcinoma 7.4 GB 48,628 cells bronze
TechnologyMIBI-TOF
Organismmouse
Tissueliver
Conditionintrahepatic cholangiocarcinoma
Size7.4 GB
Cells48,628
bronze
MIBI-TOF
Mouse liver
S-BIAD2557:CSL029:slide3-D1
mouse liver intrahepatic cholangiocarcinoma 7.0 GB 40,299 cells bronze
TechnologyMIBI-TOF
Organismmouse
Tissueliver
Conditionintrahepatic cholangiocarcinoma
Size7.0 GB
Cells40,299
bronze
MIBI-TOF
Mouse liver
S-BIAD2557:CSL021:slide1-D1
mouse liver hepatocellular carcinoma 7.7 GB 57,906 cells bronze
TechnologyMIBI-TOF
Organismmouse
Tissueliver
Conditionhepatocellular carcinoma
Size7.7 GB
Cells57,906
bronze
MIBI-TOF
Mouse liver
S-BIAD2557:CSL086:slide1-C1
mouse liver 4.3 GB 45,857 cells bronze
TechnologyMIBI-TOF
Organismmouse
Tissueliver
Size4.3 GB
Cells45,857
bronze
MIBI-TOF
Mouse liver
S-BIAD2557:NL033:slide4-D1
mouse liver intrahepatic cholangiocarcinoma 5.6 GB 43,087 cells bronze
TechnologyMIBI-TOF
Organismmouse
Tissueliver
Conditionintrahepatic cholangiocarcinoma
Size5.6 GB
Cells43,087
bronze
MIBI-TOF
Mouse liver
S-BIAD2557:CSL106:slide2-A1
mouse liver hepatocellular carcinoma 8.4 GB 56,427 cells bronze
TechnologyMIBI-TOF
Organismmouse
Tissueliver
Conditionhepatocellular carcinoma
Size8.4 GB
Cells56,427
bronze
MIBI-TOF
Mouse liver
S-BIAD2557:CSL075:slide3-B2
mouse liver intrahepatic cholangiocarcinoma 6.9 GB 53,086 cells bronze
TechnologyMIBI-TOF
Organismmouse
Tissueliver
Conditionintrahepatic cholangiocarcinoma
Size6.9 GB
Cells53,086
bronze
MIBI-TOF
Mouse liver
S-BIAD2557:CSL077:slide3-A2
mouse liver intrahepatic cholangiocarcinoma 6.1 GB 46,938 cells bronze
TechnologyMIBI-TOF
Organismmouse
Tissueliver
Conditionintrahepatic cholangiocarcinoma
Size6.1 GB
Cells46,938
bronze
MIBI-TOF
Mouse liver
S-BIAD2557:CSL082:slide1-E1
mouse liver 4.2 GB 15,804 cells bronze
TechnologyMIBI-TOF
Organismmouse
Tissueliver
Size4.2 GB
Cells15,804
bronze
MIBI-TOF
Mouse liver
S-BIAD2557:CSL069:slide1-B1
mouse liver 6.6 GB 55,072 cells bronze
TechnologyMIBI-TOF
Organismmouse
Tissueliver
Size6.6 GB
Cells55,072
bronze
MIBI-TOF
Mouse liver
S-BIAD2557:CSL086:slide1-C2
mouse liver 303 MB 1,944 cells bronze
TechnologyMIBI-TOF
Organismmouse
Tissueliver
Size303 MB
Cells1,944
bronze
MIBI-TOF
Mouse liver
S-BIAD2557:CSL075:slide3-B1
mouse liver 315 MB 1,145 cells bronze
TechnologyMIBI-TOF
Organismmouse
Tissueliver
Size315 MB
Cells1,145
bronze
MIBI-TOF
Mouse liver
S-BIAD2557:CSL069:slide1-A1
mouse liver 301 MB 1,454 cells bronze
TechnologyMIBI-TOF
Organismmouse
Tissueliver
Size301 MB
Cells1,454
bronze
MIBI-TOF
Mouse liver
S-BIAD2557:NL006:slide4-C1
mouse liver 284 MB 890 cells bronze
TechnologyMIBI-TOF
Organismmouse
Tissueliver
Size284 MB
Cells890
bronze
MIBI-TOF
Mouse liver
S-BIAD2557:CSL101:slide2-C2
mouse liver hepatocellular carcinoma 3.7 GB 27,737 cells bronze
TechnologyMIBI-TOF
Organismmouse
Tissueliver
Conditionhepatocellular carcinoma
Size3.7 GB
Cells27,737
bronze

Cite this collection

No linked publication found — please cite the data source.