MIBI-TOF
Mouse liver
S-BIAD2557:CSL077:slide3-A1
bronze ✓ Verified publication
print(sdata)
SpatialData object
├── Images
│ ├── 'pCSL005_CSL077_Liver_MIBI_slide3-A1_0_0_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│ └── 'pCSL005_CSL077_Liver_MIBI_slide3-A1_0_1_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
├── Labels
│ ├── 'pCSL005_CSL077_Liver_MIBI_slide3-A1_0_0_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│ └── 'pCSL005_CSL077_Liver_MIBI_slide3-A1_0_1_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
├── Shapes
│ ├── 'pCSL005_CSL077_Liver_MIBI_slide3-A1_0_0_cell_boundaries': GeoDataFrame shape: (649, 2) (2D shapes)
│ └── 'pCSL005_CSL077_Liver_MIBI_slide3-A1_0_1_cell_boundaries': GeoDataFrame shape: (595, 2) (2D shapes)
└── Tables
└── 'table': AnnData (1244, 30)
with coordinate systems:
▸ 'global', with elements:
pCSL005_CSL077_Liver_MIBI_slide3-A1_0_0_image (Images), pCSL005_CSL077_Liver_MIBI_slide3-A1_0_1_image (Images), pCSL005_CSL077_Liver_MIBI_slide3-A1_0_0_whole_cell_labels (Labels), pCSL005_CSL077_Liver_MIBI_slide3-A1_0_1_whole_cell_labels (Labels), pCSL005_CSL077_Liver_MIBI_slide3-A1_0_0_cell_boundaries (Shapes), pCSL005_CSL077_Liver_MIBI_slide3-A1_0_1_cell_boundaries (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("thvaztPtjPk2BYgL0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("thvaztPtjPk2BYgL") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download thvaztPtjPk2BYgL0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/thvaztPtjPk2BYgL
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid thvaztPtjPk2BYgLLicense: CC BY 4.0
Metadata
- Technology
- MIBI-TOF
- Organism
- mouse
- Tissue
- liver
- Modality
- protein
- Observations (cells)
- 1,244
- Tier
- bronze
- Chemistry
- MIBI
- Staining
- Antibodies
- Size
- 317 MB
- Sample ID
- S-BIAD2557:CSL077:slide3-A1
- License
- CC BY 4.0
- Published
- Jun 30, 2026
Cite this dataset
doi.org/10.64898/2026.03.24.711280 ↗ BibTeX
@article{bia:S-BIAD2557,
doi = {10.64898/2026.03.24.711280},
title = {S-BIAD2557:CSL021:slide1-D1},
year = {2026}
}Source: BioImage Archive ↗ · License: CC BY 4.0 ↗ · Reprocessed to SpatialData by SpatialData-DB