MIBI-TOF

Mouse liver

S-BIAD2557:CSL082:slide1-E1

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MIBI-TOF

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SpatialData object
├── Images
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_0_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_1_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_2_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_3_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_4_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_5_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_6_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_7_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_8_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_9_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_10_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_11_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_12_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_13_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_14_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_15_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_16_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_17_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_18_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_19_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_20_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_21_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_22_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_23_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_24_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_25_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_26_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_27_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_28_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_29_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_30_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_31_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_32_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_33_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_34_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     └── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_35_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
├── Labels
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_0_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_1_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_2_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_3_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_4_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_5_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_6_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_7_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_8_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_9_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_10_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_11_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_12_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_13_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_14_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_15_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_16_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_17_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_18_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_19_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_20_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_21_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_22_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_23_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_24_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_25_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_26_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_27_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_28_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_29_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_30_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_31_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_32_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_33_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_34_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     └── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_35_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
├── Shapes
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_0_cell_boundaries': GeoDataFrame shape: (376, 2) (2D shapes)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_1_cell_boundaries': GeoDataFrame shape: (179, 2) (2D shapes)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_2_cell_boundaries': GeoDataFrame shape: (66, 2) (2D shapes)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_3_cell_boundaries': GeoDataFrame shape: (249, 2) (2D shapes)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_4_cell_boundaries': GeoDataFrame shape: (77, 2) (2D shapes)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_5_cell_boundaries': GeoDataFrame shape: (26, 2) (2D shapes)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_6_cell_boundaries': GeoDataFrame shape: (349, 2) (2D shapes)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_7_cell_boundaries': GeoDataFrame shape: (112, 2) (2D shapes)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_8_cell_boundaries': GeoDataFrame shape: (12, 2) (2D shapes)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_9_cell_boundaries': GeoDataFrame shape: (591, 2) (2D shapes)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_10_cell_boundaries': GeoDataFrame shape: (313, 2) (2D shapes)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_11_cell_boundaries': GeoDataFrame shape: (146, 2) (2D shapes)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_12_cell_boundaries': GeoDataFrame shape: (13, 2) (2D shapes)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_13_cell_boundaries': GeoDataFrame shape: (617, 2) (2D shapes)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_14_cell_boundaries': GeoDataFrame shape: (310, 2) (2D shapes)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_15_cell_boundaries': GeoDataFrame shape: (208, 2) (2D shapes)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_16_cell_boundaries': GeoDataFrame shape: (28, 2) (2D shapes)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_17_cell_boundaries': GeoDataFrame shape: (669, 2) (2D shapes)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_18_cell_boundaries': GeoDataFrame shape: (435, 2) (2D shapes)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_19_cell_boundaries': GeoDataFrame shape: (372, 2) (2D shapes)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_20_cell_boundaries': GeoDataFrame shape: (52, 2) (2D shapes)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_21_cell_boundaries': GeoDataFrame shape: (590, 2) (2D shapes)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_22_cell_boundaries': GeoDataFrame shape: (406, 2) (2D shapes)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_23_cell_boundaries': GeoDataFrame shape: (92, 2) (2D shapes)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_24_cell_boundaries': GeoDataFrame shape: (510, 2) (2D shapes)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_25_cell_boundaries': GeoDataFrame shape: (670, 2) (2D shapes)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_26_cell_boundaries': GeoDataFrame shape: (228, 2) (2D shapes)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_27_cell_boundaries': GeoDataFrame shape: (426, 2) (2D shapes)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_28_cell_boundaries': GeoDataFrame shape: (976, 2) (2D shapes)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_29_cell_boundaries': GeoDataFrame shape: (841, 2) (2D shapes)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_30_cell_boundaries': GeoDataFrame shape: (548, 2) (2D shapes)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_31_cell_boundaries': GeoDataFrame shape: (996, 2) (2D shapes)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_32_cell_boundaries': GeoDataFrame shape: (1248, 2) (2D shapes)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_33_cell_boundaries': GeoDataFrame shape: (723, 2) (2D shapes)
│     ├── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_34_cell_boundaries': GeoDataFrame shape: (1147, 2) (2D shapes)
│     └── 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_35_cell_boundaries': GeoDataFrame shape: (1203, 2) (2D shapes)
└── Tables
      └── 'table': AnnData (15804, 30)
with coordinate systems:
    ▸ 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_0', with elements:
        pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_0_image (Images), pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_0_whole_cell_labels (Labels), pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_0_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_1', with elements:
        pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_1_image (Images), pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_1_whole_cell_labels (Labels), pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_1_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_2', with elements:
        pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_2_image (Images), pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_2_whole_cell_labels (Labels), pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_2_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_3', with elements:
        pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_3_image (Images), pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_3_whole_cell_labels (Labels), pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_3_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_4', with elements:
        pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_4_image (Images), pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_4_whole_cell_labels (Labels), pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_4_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL082_Tumor_MIBI_slide1-E1_0_5', with elements:
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Install (Python 3.12+) Docs →

Python · sddb client

from sddb import Catalog

ds = Catalog().dataset("gILhExKE1gIN57mw0000")
ds.elements()          # inspect without downloading
sdata = ds.to_sdata()  # cached locally, reused
print(sdata)

Install (Python 3.12+) Docs →

Python · lamindb

Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.

import lamindb as ln

db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("gILhExKE1gIN57mw")   # stem uid: Lamin resolves it to the latest version

sdata = artifact.load()   # cache, then load into memory
group = artifact.open()   # stream without downloading
path  = artifact.cache()  # sync into the local cache, returns the path

Install (Python 3.12+) Docs →

Shell

# sddb client: download the .zarr into data/
sddb-cli download gILhExKE1gIN57mw0000 --dest data/

# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/gILhExKE1gIN57mw

# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid gILhExKE1gIN57mw

Install (Python 3.12+) Docs →

License: CC BY 4.0

View on Lamin ↗ Flag a data issue

Part of collection

bia-s-biad2557→

25 datasets · publication

Metadata

Technology: MIBI-TOF
Organism: mouse
Tissue: liver
Modality: protein
Observations (cells): 15,804
Tier: bronze
Chemistry: MIBI
Staining: Antibodies
Size: 4.2 GB
Sample ID: S-BIAD2557:CSL082:slide1-E1
License: CC BY 4.0
Published: Jun 30, 2026

Cite this dataset

doi.org/10.64898/2026.03.24.711280 ↗

BibTeX

@article{bia:S-BIAD2557,
  doi = {10.64898/2026.03.24.711280},
  title = {S-BIAD2557:CSL021:slide1-D1},
  year = {2026}
}

Source: BioImage Archive ↗ · License: CC BY 4.0 ↗ · Reprocessed to SpatialData by SpatialData-DB