MIBI-TOF

Mouse liver

S-BIAD2557:CSL086:slide1-C1

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MIBI-TOF

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SpatialData object
├── Images
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_0_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_1_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_2_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_3_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_4_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_5_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_6_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_7_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_8_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_9_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_10_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_11_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_12_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_13_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_14_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_15_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_16_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_17_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_18_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_19_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_20_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_21_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_22_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_23_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_24_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_25_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     └── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_26_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
├── Labels
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_0_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_1_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_2_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_3_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_4_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_5_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_6_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_7_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_8_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_9_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_10_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_11_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_12_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_13_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_14_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_15_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_16_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_17_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_18_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_19_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_20_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_21_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_22_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_23_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_24_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_25_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     └── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_26_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
├── Shapes
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_0_cell_boundaries': GeoDataFrame shape: (1243, 2) (2D shapes)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_1_cell_boundaries': GeoDataFrame shape: (1433, 2) (2D shapes)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_2_cell_boundaries': GeoDataFrame shape: (1564, 2) (2D shapes)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_3_cell_boundaries': GeoDataFrame shape: (1119, 2) (2D shapes)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_4_cell_boundaries': GeoDataFrame shape: (942, 2) (2D shapes)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_5_cell_boundaries': GeoDataFrame shape: (1534, 2) (2D shapes)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_6_cell_boundaries': GeoDataFrame shape: (1831, 2) (2D shapes)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_7_cell_boundaries': GeoDataFrame shape: (2216, 2) (2D shapes)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_8_cell_boundaries': GeoDataFrame shape: (2168, 2) (2D shapes)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_9_cell_boundaries': GeoDataFrame shape: (1857, 2) (2D shapes)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_10_cell_boundaries': GeoDataFrame shape: (1703, 2) (2D shapes)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_11_cell_boundaries': GeoDataFrame shape: (1061, 2) (2D shapes)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_12_cell_boundaries': GeoDataFrame shape: (1711, 2) (2D shapes)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_13_cell_boundaries': GeoDataFrame shape: (2264, 2) (2D shapes)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_14_cell_boundaries': GeoDataFrame shape: (2181, 2) (2D shapes)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_15_cell_boundaries': GeoDataFrame shape: (2132, 2) (2D shapes)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_16_cell_boundaries': GeoDataFrame shape: (2035, 2) (2D shapes)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_17_cell_boundaries': GeoDataFrame shape: (1906, 2) (2D shapes)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_18_cell_boundaries': GeoDataFrame shape: (1522, 2) (2D shapes)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_19_cell_boundaries': GeoDataFrame shape: (923, 2) (2D shapes)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_20_cell_boundaries': GeoDataFrame shape: (1400, 2) (2D shapes)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_21_cell_boundaries': GeoDataFrame shape: (1619, 2) (2D shapes)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_22_cell_boundaries': GeoDataFrame shape: (2067, 2) (2D shapes)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_23_cell_boundaries': GeoDataFrame shape: (1789, 2) (2D shapes)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_24_cell_boundaries': GeoDataFrame shape: (2004, 2) (2D shapes)
│     ├── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_25_cell_boundaries': GeoDataFrame shape: (2027, 2) (2D shapes)
│     └── 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_26_cell_boundaries': GeoDataFrame shape: (1606, 2) (2D shapes)
└── Tables
      └── 'table': AnnData (45857, 30)
with coordinate systems:
    ▸ 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_0', with elements:
        pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_0_image (Images), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_0_whole_cell_labels (Labels), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_0_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_1', with elements:
        pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_1_image (Images), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_1_whole_cell_labels (Labels), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_1_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_2', with elements:
        pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_2_image (Images), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_2_whole_cell_labels (Labels), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_2_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_3', with elements:
        pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_3_image (Images), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_3_whole_cell_labels (Labels), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_3_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_4', with elements:
        pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_4_image (Images), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_4_whole_cell_labels (Labels), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_4_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_5', with elements:
        pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_5_image (Images), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_5_whole_cell_labels (Labels), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_5_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_6', with elements:
        pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_6_image (Images), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_6_whole_cell_labels (Labels), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_6_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_7', with elements:
        pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_7_image (Images), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_7_whole_cell_labels (Labels), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_7_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_8', with elements:
        pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_8_image (Images), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_8_whole_cell_labels (Labels), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_8_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_9', with elements:
        pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_9_image (Images), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_9_whole_cell_labels (Labels), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_9_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_10', with elements:
        pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_10_image (Images), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_10_whole_cell_labels (Labels), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_10_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_11', with elements:
        pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_11_image (Images), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_11_whole_cell_labels (Labels), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_11_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_12', with elements:
        pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_12_image (Images), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_12_whole_cell_labels (Labels), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_12_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_13', with elements:
        pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_13_image (Images), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_13_whole_cell_labels (Labels), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_13_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_14', with elements:
        pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_14_image (Images), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_14_whole_cell_labels (Labels), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_14_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_15', with elements:
        pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_15_image (Images), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_15_whole_cell_labels (Labels), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_15_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_16', with elements:
        pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_16_image (Images), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_16_whole_cell_labels (Labels), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_16_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_17', with elements:
        pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_17_image (Images), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_17_whole_cell_labels (Labels), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_17_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_18', with elements:
        pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_18_image (Images), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_18_whole_cell_labels (Labels), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_18_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_19', with elements:
        pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_19_image (Images), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_19_whole_cell_labels (Labels), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_19_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_20', with elements:
        pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_20_image (Images), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_20_whole_cell_labels (Labels), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_20_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_21', with elements:
        pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_21_image (Images), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_21_whole_cell_labels (Labels), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_21_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_22', with elements:
        pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_22_image (Images), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_22_whole_cell_labels (Labels), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_22_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_23', with elements:
        pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_23_image (Images), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_23_whole_cell_labels (Labels), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_23_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_24', with elements:
        pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_24_image (Images), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_24_whole_cell_labels (Labels), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_24_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_25', with elements:
        pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_25_image (Images), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_25_whole_cell_labels (Labels), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_25_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_26', with elements:
        pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_26_image (Images), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_26_whole_cell_labels (Labels), pCSL005_CSL086_Tumor_MIBI_slide1-C1_0_26_cell_boundaries (Shapes)

Install (Python 3.12+) Docs →

Python · sddb client

from sddb import Catalog

ds = Catalog().dataset("BLWMb5v6w5MiWOIF0000")
ds.elements()          # inspect without downloading
sdata = ds.to_sdata()  # cached locally, reused
print(sdata)

Install (Python 3.12+) Docs →

Python · lamindb

Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.

import lamindb as ln

db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("BLWMb5v6w5MiWOIF")   # stem uid: Lamin resolves it to the latest version

sdata = artifact.load()   # cache, then load into memory
group = artifact.open()   # stream without downloading
path  = artifact.cache()  # sync into the local cache, returns the path

Install (Python 3.12+) Docs →

Shell

# sddb client: download the .zarr into data/
sddb-cli download BLWMb5v6w5MiWOIF0000 --dest data/

# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/BLWMb5v6w5MiWOIF

# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid BLWMb5v6w5MiWOIF

Install (Python 3.12+) Docs →

License: CC BY 4.0

View on Lamin ↗ Flag a data issue

Part of collection

bia-s-biad2557→

25 datasets · publication

Metadata

Technology: MIBI-TOF
Organism: mouse
Tissue: liver
Modality: protein
Observations (cells): 45,857
Tier: bronze
Chemistry: MIBI
Staining: Antibodies
Size: 4.3 GB
Sample ID: S-BIAD2557:CSL086:slide1-C1
License: CC BY 4.0
Published: Jun 30, 2026

Cite this dataset

doi.org/10.64898/2026.03.24.711280 ↗

BibTeX

@article{bia:S-BIAD2557,
  doi = {10.64898/2026.03.24.711280},
  title = {S-BIAD2557:CSL021:slide1-D1},
  year = {2026}
}

Source: BioImage Archive ↗ · License: CC BY 4.0 ↗ · Reprocessed to SpatialData by SpatialData-DB