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MIBI-TOF

Mouse liver

S-BIAD2557:CSL069:slide1-B1

bronze ✓ Verified publication
MIBI-TOF
print(sdata) 
SpatialData object
├── Images
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_0_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_1_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_2_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_3_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_4_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_5_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_6_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_7_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_8_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_9_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_10_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_11_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_12_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_13_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_14_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_15_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_16_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_17_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_18_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_19_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_20_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_21_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_22_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_23_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_24_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_25_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_26_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_27_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_28_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_29_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_30_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_31_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_32_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_33_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_34_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_35_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_36_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_37_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_38_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_39_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_40_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_41_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_42_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     └── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_43_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
├── Labels
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_0_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_1_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_2_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_3_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_4_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_5_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_6_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_7_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_8_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_9_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_10_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_11_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_12_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_13_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_14_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_15_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_16_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_17_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_18_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_19_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_20_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_21_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_22_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_23_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_24_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_25_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_26_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_27_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_28_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_29_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_30_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_31_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_32_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_33_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_34_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_35_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_36_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_37_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_38_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_39_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_40_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_41_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_42_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     └── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_43_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
├── Shapes
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_0_cell_boundaries': GeoDataFrame shape: (1045, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_1_cell_boundaries': GeoDataFrame shape: (844, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_2_cell_boundaries': GeoDataFrame shape: (597, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_3_cell_boundaries': GeoDataFrame shape: (41, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_4_cell_boundaries': GeoDataFrame shape: (882, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_5_cell_boundaries': GeoDataFrame shape: (1259, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_6_cell_boundaries': GeoDataFrame shape: (1367, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_7_cell_boundaries': GeoDataFrame shape: (1218, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_8_cell_boundaries': GeoDataFrame shape: (1117, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_9_cell_boundaries': GeoDataFrame shape: (1220, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_10_cell_boundaries': GeoDataFrame shape: (1235, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_11_cell_boundaries': GeoDataFrame shape: (1191, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_12_cell_boundaries': GeoDataFrame shape: (1209, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_13_cell_boundaries': GeoDataFrame shape: (1288, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_14_cell_boundaries': GeoDataFrame shape: (1295, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_15_cell_boundaries': GeoDataFrame shape: (1237, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_16_cell_boundaries': GeoDataFrame shape: (993, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_17_cell_boundaries': GeoDataFrame shape: (1326, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_18_cell_boundaries': GeoDataFrame shape: (1238, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_19_cell_boundaries': GeoDataFrame shape: (1339, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_20_cell_boundaries': GeoDataFrame shape: (1208, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_21_cell_boundaries': GeoDataFrame shape: (1398, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_22_cell_boundaries': GeoDataFrame shape: (1505, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_23_cell_boundaries': GeoDataFrame shape: (1441, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_24_cell_boundaries': GeoDataFrame shape: (1412, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_25_cell_boundaries': GeoDataFrame shape: (1452, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_26_cell_boundaries': GeoDataFrame shape: (1532, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_27_cell_boundaries': GeoDataFrame shape: (1448, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_28_cell_boundaries': GeoDataFrame shape: (1413, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_29_cell_boundaries': GeoDataFrame shape: (1524, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_30_cell_boundaries': GeoDataFrame shape: (1391, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_31_cell_boundaries': GeoDataFrame shape: (1459, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_32_cell_boundaries': GeoDataFrame shape: (1353, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_33_cell_boundaries': GeoDataFrame shape: (1387, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_34_cell_boundaries': GeoDataFrame shape: (1426, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_35_cell_boundaries': GeoDataFrame shape: (1356, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_36_cell_boundaries': GeoDataFrame shape: (1331, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_37_cell_boundaries': GeoDataFrame shape: (1438, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_38_cell_boundaries': GeoDataFrame shape: (1408, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_39_cell_boundaries': GeoDataFrame shape: (1218, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_40_cell_boundaries': GeoDataFrame shape: (1085, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_41_cell_boundaries': GeoDataFrame shape: (1405, 2) (2D shapes)
│     ├── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_42_cell_boundaries': GeoDataFrame shape: (1421, 2) (2D shapes)
│     └── 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_43_cell_boundaries': GeoDataFrame shape: (1120, 2) (2D shapes)
└── Tables
      └── 'table': AnnData (55072, 30)
with coordinate systems:
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_0', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_0_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_0_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_0_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_1', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_1_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_1_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_1_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_2', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_2_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_2_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_2_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_3', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_3_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_3_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_3_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_4', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_4_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_4_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_4_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_5', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_5_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_5_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_5_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_6', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_6_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_6_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_6_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_7', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_7_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_7_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_7_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_8', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_8_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_8_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_8_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_9', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_9_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_9_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_9_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_10', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_10_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_10_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_10_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_11', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_11_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_11_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_11_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_12', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_12_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_12_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_12_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_13', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_13_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_13_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_13_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_14', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_14_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_14_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_14_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_15', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_15_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_15_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_15_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_16', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_16_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_16_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_16_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_17', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_17_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_17_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_17_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_18', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_18_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_18_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_18_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_19', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_19_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_19_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_19_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_20', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_20_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_20_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_20_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_21', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_21_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_21_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_21_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_22', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_22_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_22_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_22_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_23', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_23_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_23_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_23_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_24', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_24_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_24_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_24_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_25', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_25_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_25_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_25_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_26', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_26_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_26_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_26_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_27', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_27_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_27_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_27_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_28', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_28_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_28_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_28_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_29', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_29_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_29_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_29_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_30', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_30_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_30_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_30_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_31', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_31_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_31_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_31_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_32', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_32_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_32_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_32_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_33', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_33_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_33_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_33_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_34', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_34_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_34_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_34_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_35', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_35_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_35_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_35_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_36', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_36_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_36_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_36_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_37', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_37_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_37_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_37_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_38', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_38_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_38_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_38_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_39', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_39_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_39_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_39_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_40', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_40_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_40_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_40_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_41', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_41_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_41_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_41_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_42', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_42_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_42_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_42_cell_boundaries (Shapes)
    ▸ 'pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_43', with elements:
        pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_43_image (Images), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_43_whole_cell_labels (Labels), pCSL005_CSL069_Tumor_MIBI_slide1-B1_0_43_cell_boundaries (Shapes)
Install (Python 3.12+) Docs →
Python · sddb client 
from sddb import Catalog

ds = Catalog().dataset("jekpsQKMaKzTWnqx0000")
ds.elements()          # inspect without downloading
sdata = ds.to_sdata()  # cached locally, reused
print(sdata)
Install (Python 3.12+) Docs →
Python · lamindb

Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.

import lamindb as ln

db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("jekpsQKMaKzTWnqx")   # stem uid: Lamin resolves it to the latest version

sdata = artifact.load()   # cache, then load into memory
group = artifact.open()   # stream without downloading
path  = artifact.cache()  # sync into the local cache, returns the path
Install (Python 3.12+) Docs →
Shell 
# sddb client: download the .zarr into data/
sddb-cli download jekpsQKMaKzTWnqx0000 --dest data/

# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/jekpsQKMaKzTWnqx

# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid jekpsQKMaKzTWnqx
Install (Python 3.12+) Docs →

License: CC BY 4.0

View on Lamin ↗ Flag a data issue
Part of collection
bia-s-biad2557→
25 datasets · publication

Metadata

Technology
MIBI-TOF
Organism
mouse
Tissue
liver
Modality
protein
Observations (cells)
55,072
Tier
bronze
Chemistry
MIBI
Staining
Antibodies
Size
6.6 GB
Sample ID
S-BIAD2557:CSL069:slide1-B1
License
CC BY 4.0
Published
Jun 30, 2026

Cite this dataset

doi.org/10.64898/2026.03.24.711280 ↗
BibTeX 
@article{bia:S-BIAD2557,
  doi = {10.64898/2026.03.24.711280},
  title = {S-BIAD2557:CSL021:slide1-D1},
  year = {2026}
}

Source: BioImage Archive ↗ · License: CC BY 4.0 ↗ · Reprocessed to SpatialData by SpatialData-DB