MIBI-TOF

Mouse liver

S-BIAD2557:CSL029:slide3-D1

bronze intrahepatic cholangiocarcinoma ✓ Verified publication

MIBI-TOF

Preview Client Lamin CLI

print(sdata)

SpatialData object
├── Images
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_0_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_1_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_2_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_3_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_4_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_5_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_6_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_7_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_8_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_9_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_10_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_11_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_12_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_13_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_14_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_15_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_16_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_17_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_18_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_19_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_20_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_21_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_22_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_23_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_24_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_25_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_26_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_27_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_28_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_29_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_30_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_31_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_32_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_33_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_34_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_35_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_36_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_37_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_38_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_39_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_40_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_41_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_42_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_43_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_44_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
│     └── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_45_image': DataTree[cyx] (30, 1024, 1024), (30, 512, 512), (30, 256, 256), (30, 128, 128), (30, 64, 64)
├── Labels
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_0_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_1_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_2_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_3_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_4_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_5_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_6_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_7_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_8_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_9_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_10_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_11_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_12_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_13_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_14_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_15_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_16_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_17_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_18_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_19_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_20_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_21_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_22_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_23_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_24_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_25_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_26_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_27_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_28_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_29_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_30_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_31_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_32_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_33_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_34_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_35_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_36_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_37_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_38_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_39_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_40_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_41_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_42_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_43_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_44_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
│     └── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_45_whole_cell_labels': DataTree[yx] (1024, 1024), (512, 512), (256, 256), (128, 128), (64, 64)
├── Shapes
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_0_cell_boundaries': GeoDataFrame shape: (1183, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_1_cell_boundaries': GeoDataFrame shape: (977, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_2_cell_boundaries': GeoDataFrame shape: (1100, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_3_cell_boundaries': GeoDataFrame shape: (937, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_4_cell_boundaries': GeoDataFrame shape: (726, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_5_cell_boundaries': GeoDataFrame shape: (618, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_6_cell_boundaries': GeoDataFrame shape: (359, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_7_cell_boundaries': GeoDataFrame shape: (1161, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_8_cell_boundaries': GeoDataFrame shape: (999, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_9_cell_boundaries': GeoDataFrame shape: (646, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_10_cell_boundaries': GeoDataFrame shape: (400, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_11_cell_boundaries': GeoDataFrame shape: (346, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_12_cell_boundaries': GeoDataFrame shape: (1103, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_13_cell_boundaries': GeoDataFrame shape: (855, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_14_cell_boundaries': GeoDataFrame shape: (826, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_15_cell_boundaries': GeoDataFrame shape: (577, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_16_cell_boundaries': GeoDataFrame shape: (313, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_17_cell_boundaries': GeoDataFrame shape: (899, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_18_cell_boundaries': GeoDataFrame shape: (965, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_19_cell_boundaries': GeoDataFrame shape: (1113, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_20_cell_boundaries': GeoDataFrame shape: (869, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_21_cell_boundaries': GeoDataFrame shape: (366, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_22_cell_boundaries': GeoDataFrame shape: (1004, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_23_cell_boundaries': GeoDataFrame shape: (1005, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_24_cell_boundaries': GeoDataFrame shape: (1092, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_25_cell_boundaries': GeoDataFrame shape: (984, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_26_cell_boundaries': GeoDataFrame shape: (603, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_27_cell_boundaries': GeoDataFrame shape: (1212, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_28_cell_boundaries': GeoDataFrame shape: (1106, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_29_cell_boundaries': GeoDataFrame shape: (943, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_30_cell_boundaries': GeoDataFrame shape: (774, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_31_cell_boundaries': GeoDataFrame shape: (713, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_32_cell_boundaries': GeoDataFrame shape: (1069, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_33_cell_boundaries': GeoDataFrame shape: (1060, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_34_cell_boundaries': GeoDataFrame shape: (1108, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_35_cell_boundaries': GeoDataFrame shape: (885, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_36_cell_boundaries': GeoDataFrame shape: (618, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_37_cell_boundaries': GeoDataFrame shape: (1045, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_38_cell_boundaries': GeoDataFrame shape: (1126, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_39_cell_boundaries': GeoDataFrame shape: (951, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_40_cell_boundaries': GeoDataFrame shape: (921, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_41_cell_boundaries': GeoDataFrame shape: (699, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_42_cell_boundaries': GeoDataFrame shape: (1043, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_43_cell_boundaries': GeoDataFrame shape: (1048, 2) (2D shapes)
│     ├── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_44_cell_boundaries': GeoDataFrame shape: (1066, 2) (2D shapes)
│     └── 'pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_45_cell_boundaries': GeoDataFrame shape: (886, 2) (2D shapes)
└── Tables
      └── 'table': AnnData (40299, 30)
with coordinate systems:
    ▸ 'global', with elements:
        pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_0_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_1_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_2_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_3_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_4_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_5_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_6_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_7_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_8_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_9_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_10_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_11_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_12_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_13_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_14_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_15_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_16_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_17_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_18_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_19_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_20_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_21_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_22_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_23_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_24_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_25_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_26_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_27_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_28_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_29_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_30_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_31_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_32_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_33_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_34_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_35_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_36_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_37_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_38_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_39_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_40_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_41_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_42_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_43_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_44_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_45_image (Images), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_0_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_1_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_2_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_3_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_4_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_5_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_6_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_7_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_8_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_9_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_10_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_11_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_12_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_13_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_14_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_15_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_16_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_17_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_18_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_19_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_20_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_21_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_22_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_23_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_24_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_25_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_26_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_27_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_28_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_29_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_30_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_31_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_32_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_33_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_34_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_35_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_36_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_37_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_38_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_39_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_40_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_41_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_42_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_43_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_44_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_45_whole_cell_labels (Labels), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_0_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_1_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_2_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_3_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_4_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_5_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_6_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_7_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_8_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_9_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_10_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_11_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_12_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_13_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_14_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_15_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_16_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_17_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_18_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_19_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_20_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_21_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_22_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_23_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_24_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_25_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_26_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_27_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_28_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_29_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_30_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_31_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_32_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_33_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_34_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_35_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_36_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_37_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_38_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_39_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_40_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_41_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_42_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_43_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_44_cell_boundaries (Shapes), pCSL005_CSL029_Chol-PK_MIBI_slide3-D1_0_45_cell_boundaries (Shapes)

Install (Python 3.12+) Docs →

Python · sddb client

from sddb import Catalog

ds = Catalog().dataset("Fo78q1d9EJNYXgLY0000")
ds.elements()          # inspect without downloading
sdata = ds.to_sdata()  # cached locally, reused
print(sdata)

Install (Python 3.12+) Docs →

Python · lamindb

Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.

import lamindb as ln

db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("Fo78q1d9EJNYXgLY")   # stem uid: Lamin resolves it to the latest version

sdata = artifact.load()   # cache, then load into memory
group = artifact.open()   # stream without downloading
path  = artifact.cache()  # sync into the local cache, returns the path

Install (Python 3.12+) Docs →

Shell

# sddb client: download the .zarr into data/
sddb-cli download Fo78q1d9EJNYXgLY0000 --dest data/

# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/Fo78q1d9EJNYXgLY

# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid Fo78q1d9EJNYXgLY

Install (Python 3.12+) Docs →

License: CC BY 4.0

View on Lamin ↗ Flag a data issue

Part of collection

bia-s-biad2557→

25 datasets · publication

Metadata

Technology: MIBI-TOF
Organism: mouse
Tissue: liver
Condition: intrahepatic cholangiocarcinoma
Modality: protein
Observations (cells): 40,299
Tier: bronze
Chemistry: MIBI
Staining: Antibodies
Size: 7.0 GB
Sample ID: S-BIAD2557:CSL029:slide3-D1
License: CC BY 4.0
Published: Jun 30, 2026

Cite this dataset

doi.org/10.64898/2026.03.24.711280 ↗

BibTeX

@article{bia:S-BIAD2557,
  doi = {10.64898/2026.03.24.711280},
  title = {S-BIAD2557:CSL021:slide1-D1},
  year = {2026}
}

Source: BioImage Archive ↗ · License: CC BY 4.0 ↗ · Reprocessed to SpatialData by SpatialData-DB