Collections / Accelerated cerebromicrovascular senescence contributes to cognitive decline in a mouse model of paclitaxel (Taxol)-induced chemobrain [Spatial Transcriptomics]

Accelerated cerebromicrovascular senescence contributes to cognitive decline in a mouse model of paclitaxel (Taxol)-induced chemobrain [Spatial Transcriptomics]

Chemotherapy-induced cognitive impairment ("chemobrain") is a frequent side-effect in cancer survivors treated with paclitaxel (PTX). The mechanisms responsible for PTX-induced cognitive impairment remain obscure, and there are no effective treatments or prevention strategies. Here, we test the hypothesis that PTX induces endothelial senescence, which impairs microvascular function and contributes to the genesis of cognitive decline. We treated transgenic p16-3MR mice, which allows the detection and selective elimination of senescent cells, with PTX (5 mg/kg/day, 2 cycles; 5 days/cycle). PTX-treated and control mice were tested for spatial memory performance, neurovascular coupling (NVC) responses (whisker-stimulation-induced increases in cerebral blood flow), microvascular density, blood-brain barrier (BBB) permeability and the presence of senescent endothelial cells (by flow cytometry and single-cell transcriptomics) at 6 months post-treatment. PTX induced senescence in endothelial cells, which associated with microvascular rarefaction, NVC dysfunction, BBB disruption, neuroinflammation, and impaired performance on cognitive tasks. To establish a causal relationship between PTX-induced senescence and impaired microvascular functions, senescent cells were depleted from PTX-treated animals (at 3 months post-treatment) by genetic (ganciclovir) or pharmacological (treatment with the senolytic drug ABT263/Navitoclax) means. In PTX treated mice, both treatments effectively eliminated senescent endothelial cells, rescued endothelium-mediated NVC responses and BBB integrity, increased capillarization and improved cognitive performance. Our findings suggest that senolytic treatments can be a promising strategy for preventing chemotherapy-induced cognitive impairment.

Datasets7
Size~310 MB
AssayVisium
Samplemouse · brain
KindComparison
Flag a data issue
PMID:37243381 ↗
Python · sddb client
from sddb import Catalog

cohort = Catalog().collection("geo-gse325554")
cohort.members        # the 7 datasets as a table

print(cohort.licenses())              # check the terms before you download

sdatas = cohort.to_dict()             # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/")
Python · lamindb

Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.

import lamindb as ln

db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="geo-gse325554")
coll.ordered_artifacts.to_dataframe()   # the 7 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
Shell
# sddb client: download every member .zarr into data/
sddb-cli download --collection geo-gse325554 --dest data/

Licenses: 7 NCBI GEO policy

Open in Vitessce
Visium
Mouse brain
GSM9608402
mouse brain 48.2 MB 2,944 spots bronze H&E NCBI GEO policy
TechnologyVisium
Organismmouse
Tissuebrain
Size48.2 MB
Spots2,944
bronze H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium
Mouse brain
GSM9608399
mouse brain 43.3 MB 2,700 spots bronze H&E NCBI GEO policy
TechnologyVisium
Organismmouse
Tissuebrain
Size43.3 MB
Spots2,700
bronze H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium
Mouse brain
GSM9608404
mouse brain 41.8 MB 2,842 spots bronze H&E NCBI GEO policy
TechnologyVisium
Organismmouse
Tissuebrain
Size41.8 MB
Spots2,842
bronze H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium
Mouse brain
GSM9608403
mouse brain 46.2 MB 2,824 spots bronze H&E NCBI GEO policy
TechnologyVisium
Organismmouse
Tissuebrain
Size46.2 MB
Spots2,824
bronze H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium
Mouse brain
GSM9608405
mouse brain 49.4 MB 2,927 spots bronze H&E NCBI GEO policy
TechnologyVisium
Organismmouse
Tissuebrain
Size49.4 MB
Spots2,927
bronze H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium
Mouse brain
GSM9608398
mouse brain 33.0 MB 2,453 spots bronze H&E NCBI GEO policy
TechnologyVisium
Organismmouse
Tissuebrain
Size33.0 MB
Spots2,453
bronze H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium
Mouse brain
GSM9608400
mouse brain 48.5 MB 2,636 spots bronze H&E NCBI GEO policy
TechnologyVisium
Organismmouse
Tissuebrain
Size48.5 MB
Spots2,636
bronze H&E NCBI GEO policy Open in Vitessce

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