Visium
Mouse brain
GSM9608405
bronze Interactive viewer H&E Provisional
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM9608405_GCV2_hires_image': DataArray[cyx] (3, 2000, 1946)
│ └── 'GSM9608405_GCV2_lowres_image': DataArray[cyx] (3, 600, 584)
├── Shapes
│ └── 'GSM9608405_GCV2': GeoDataFrame shape: (2927, 2) (2D shapes)
└── Tables
└── 'table': AnnData (2927, 32285)
with coordinate systems:
▸ 'GSM9608405_GCV2', with elements:
GSM9608405_GCV2_hires_image (Images), GSM9608405_GCV2_lowres_image (Images), GSM9608405_GCV2 (Shapes)
▸ 'GSM9608405_GCV2_downscaled_hires', with elements:
GSM9608405_GCV2_hires_image (Images), GSM9608405_GCV2 (Shapes)
▸ 'GSM9608405_GCV2_downscaled_lowres', with elements:
GSM9608405_GCV2_lowres_image (Images), GSM9608405_GCV2 (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("EIvaFo4iBtjPHSBB0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("EIvaFo4iBtjPHSBB") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download EIvaFo4iBtjPHSBB0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/EIvaFo4iBtjPHSBB
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid EIvaFo4iBtjPHSBBLicense: NCBI GEO policy
Part of collection
Accelerated cerebromicrovascular senescence contributes to cognitive decline in a mouse model of paclitaxel (Taxol)-induced chemobrain [Spatial Transcriptomics]→ 7 datasets · comparison
Metadata
- Technology
- Visium
- Organism
- mouse
- Tissue
- brain
- Modality
- RNA
- Observations (spots)
- 2,927
- Tier
- bronze
- Chemistry
- Visium v1
- Resolution
- 1,946 × 2,000 px
- mpp
- 3.481 µm/px
- Size
- 49.4 MB
- Sample ID
- GSM9608405
- License
- NCBI GEO policy
- Published
- Mar 25, 2026
Cite this dataset
doi.org/10.1111/acel.13832 ↗ BibTeX
@article{geo:GSM9608405,
doi = {10.1111/acel.13832},
title = {GSM9608405},
year = {2023}
}Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB