Visium
Mouse brain
GSM9608403
bronze Interactive viewer H&E Provisional
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM9608403_ABT2_hires_image': DataArray[cyx] (3, 2000, 1945)
│ └── 'GSM9608403_ABT2_lowres_image': DataArray[cyx] (3, 600, 584)
├── Shapes
│ └── 'GSM9608403_ABT2': GeoDataFrame shape: (2824, 2) (2D shapes)
└── Tables
└── 'table': AnnData (2824, 32285)
with coordinate systems:
▸ 'GSM9608403_ABT2', with elements:
GSM9608403_ABT2_hires_image (Images), GSM9608403_ABT2_lowres_image (Images), GSM9608403_ABT2 (Shapes)
▸ 'GSM9608403_ABT2_downscaled_hires', with elements:
GSM9608403_ABT2_hires_image (Images), GSM9608403_ABT2 (Shapes)
▸ 'GSM9608403_ABT2_downscaled_lowres', with elements:
GSM9608403_ABT2_lowres_image (Images), GSM9608403_ABT2 (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("oz8ZnInIUsPp7unS0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("oz8ZnInIUsPp7unS") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download oz8ZnInIUsPp7unS0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/oz8ZnInIUsPp7unS
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid oz8ZnInIUsPp7unSLicense: NCBI GEO policy
Part of collection
Accelerated cerebromicrovascular senescence contributes to cognitive decline in a mouse model of paclitaxel (Taxol)-induced chemobrain [Spatial Transcriptomics]→ 7 datasets · comparison
Metadata
- Technology
- Visium
- Organism
- mouse
- Tissue
- brain
- Modality
- RNA
- Observations (spots)
- 2,824
- Tier
- bronze
- Chemistry
- Visium v1
- Resolution
- 1,945 × 2,000 px
- mpp
- 3.482 µm/px
- Size
- 46.2 MB
- Sample ID
- GSM9608403
- License
- NCBI GEO policy
- Published
- Mar 25, 2026
Cite this dataset
doi.org/10.1111/acel.13832 ↗ BibTeX
@article{geo:GSM9608403,
doi = {10.1111/acel.13832},
title = {GSM9608403},
year = {2023}
}Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB