Vizgen MERSCOPE
Mouse striatum
GSM8157272
bronze Interactive viewer Provisional
print(sdata)
SpatialData object
├── Shapes
│ └── 'cells': GeoDataFrame shape: (75494, 2) (2D shapes)
└── Tables
└── 'table': AnnData (75494, 381)
with coordinate systems:
▸ 'global', with elements:
cells (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("5qiQeVY4wfXfK8N60000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("5qiQeVY4wfXfK8N6") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download 5qiQeVY4wfXfK8N60000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/5qiQeVY4wfXfK8N6
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid 5qiQeVY4wfXfK8N6License: NCBI GEO policy
Metadata
- Technology
- Vizgen MERSCOPE
- Organism
- mouse
- Tissue
- striatum
- Modality
- RNA
- Observations (cells)
- 75,494
- Tier
- bronze
- Size
- 30.9 MB
- Sample ID
- GSM8157272
- License
- NCBI GEO policy
- Published
- Oct 3, 2024
Cite this dataset
doi.org/10.1038/s41467-025-63429-8 ↗ BibTeX
@article{geo:GSE262083,
doi = {10.1038/s41467-025-63429-8},
title = {GSM8157270},
year = {2025}
}Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB