Vizgen MERSCOPE
Mouse spleen
S-BIAD3359:Ctrl174a:region_1
silver Interactive viewer malaria ✓ Verified publication
print(sdata)
SpatialData object
├── Points
│ └── 'merscope_region_0_transcripts': DataFrame with shape: (37278648, 9) (3D points)
├── Shapes
│ ├── 'merscope_region_0_polygons': GeoDataFrame shape: (349136, 9) (2D shapes)
│ └── 'merscope_region_0_polygons_for_vitessce': GeoDataFrame shape: (349136, 2) (2D shapes)
└── Tables
└── 'table': AnnData (349136, 91)
with coordinate systems:
▸ 'global', with elements:
merscope_region_0_transcripts (Points), merscope_region_0_polygons (Shapes), merscope_region_0_polygons_for_vitessce (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("t1kGKgyFXpIBE0C60000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("t1kGKgyFXpIBE0C6") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download t1kGKgyFXpIBE0C60000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/t1kGKgyFXpIBE0C6
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid t1kGKgyFXpIBE0C6License: CC0 1.0
Metadata
- Technology
- Vizgen MERSCOPE
- Organism
- mouse
- Tissue
- spleen
- Condition
- malaria
- Modality
- RNA
- Observations (cells)
- 349,136
- Transcripts
- 37,278,648
- Tier
- silver
- Size
- 956 MB
- Sample ID
- S-BIAD3359:Ctrl174a:region_1
- License
- CC0 1.0
- Published
- Jun 15, 2026
Cite this dataset
doi.org/10.6019/s-biad3359 ↗ BibTeX
@article{bia:S-BIAD3359,
doi = {10.6019/s-biad3359},
title = {S-BIAD3359:Ctrl174a:region_1},
year = {2026}
}Source: BioImage Archive ↗ · License: CC0 1.0 ↗ · Reprocessed to SpatialData by SpatialData-DB