Vizgen MERSCOPE
Mouse spleen
S-BIAD3359:Ctrl174a:region_1
mouse spleen malaria 956 MB 349,136 cells silver CC0 1.0
TechnologyVizgen MERSCOPE
Organismmouse
Tissuespleen
Conditionmalaria
Cells349,136
silver CC0 1.0
Collections / bia-s-biad3359
bia-s-biad3359
Datasets1
Size~956 MB
AssayVizgen MERSCOPE
Samplemouse · spleen
KindPublication
Download the whole collection
Python · sddb client
from sddb import Catalog
cohort = Catalog().collection("bia-s-biad3359")
cohort.members # the 1 datasets as a table
print(cohort.licenses()) # check the terms before you download
sdatas = cohort.to_dict() # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/") Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="bia-s-biad3359")
coll.ordered_artifacts.to_dataframe() # the 1 members, ordered
# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()] Shell
# sddb client: download every member .zarr into data/
sddb-cli download --collection bia-s-biad3359 --dest data/Licenses: 1 CC0 1.0
Member datasets · 1
Cite this collection
No linked publication found — please cite the data source.