Visium
Zebra finch retina
GSM9266974
silver Interactive viewer No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'GSM9266974_26_26_filtered_feature_bc_matrix_full_image': DataTree[cyx] (4, 25634, 25358), (4, 12817, 12679), (4, 6408, 6339), (4, 3204, 3169), (4, 1602, 1584)
├── Shapes
│ └── 'GSM9266974_26_26_filtered_feature_bc_matrix': GeoDataFrame shape: (777, 2) (2D shapes)
└── Tables
└── 'table': AnnData (777, 16619)
with coordinate systems:
▸ 'GSM9266974_26_26_filtered_feature_bc_matrix', with elements:
GSM9266974_26_26_filtered_feature_bc_matrix_full_image (Images), GSM9266974_26_26_filtered_feature_bc_matrix (Shapes)
▸ 'GSM9266974_26_26_filtered_feature_bc_matrix_downscaled_hires', with elements:
GSM9266974_26_26_filtered_feature_bc_matrix (Shapes)
▸ 'GSM9266974_26_26_filtered_feature_bc_matrix_downscaled_lowres', with elements:
GSM9266974_26_26_filtered_feature_bc_matrix (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("ybT8LFQLcpfxoF0g0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("ybT8LFQLcpfxoF0g") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download ybT8LFQLcpfxoF0g0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/ybT8LFQLcpfxoF0g
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid ybT8LFQLcpfxoF0gLicense: NCBI GEO policy
Metadata
- Technology
- Visium
- Organism
- zebra finch
- Tissue
- retina
- Modality
- RNA
- Observations (spots)
- 777
- Tier
- silver
- Chemistry
- Visium v1
- Size
- 1.1 GB
- Sample ID
- GSM9266974
- License
- NCBI GEO policy
- Published
- Nov 11, 2025
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB