Visium
Human nasal cavity
GSM9936458
silver Interactive viewer H&E adenoid cystic carcinoma No linked publication
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM9936458_ACC-4_ST_hires_image': DataArray[cyx] (3, 2000, 1994)
│ └── 'GSM9936458_ACC-4_ST_lowres_image': DataArray[cyx] (3, 600, 598)
├── Shapes
│ └── 'GSM9936458_ACC-4_ST': GeoDataFrame shape: (2318, 2) (2D shapes)
└── Tables
└── 'table': AnnData (2318, 36601)
with coordinate systems:
▸ 'GSM9936458_ACC-4_ST', with elements:
GSM9936458_ACC-4_ST_hires_image (Images), GSM9936458_ACC-4_ST_lowres_image (Images), GSM9936458_ACC-4_ST (Shapes)
▸ 'GSM9936458_ACC-4_ST_downscaled_hires', with elements:
GSM9936458_ACC-4_ST_hires_image (Images), GSM9936458_ACC-4_ST (Shapes)
▸ 'GSM9936458_ACC-4_ST_downscaled_lowres', with elements:
GSM9936458_ACC-4_ST_lowres_image (Images), GSM9936458_ACC-4_ST (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("sgBN5l2MfhYliq1M0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("sgBN5l2MfhYliq1M") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download sgBN5l2MfhYliq1M0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/sgBN5l2MfhYliq1M
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid sgBN5l2MfhYliq1MLicense: NCBI GEO policy
Part of collection
Spatial transcriptomic dissection of intratumoral heterogeneity and microenvironment in sinonasal and skull base adenoid cystic carcinoma→ 6 datasets · other
Metadata
- Technology
- Visium
- Organism
- human
- Tissue
- nasal cavity
- Condition
- adenoid cystic carcinoma
- Modality
- RNA
- Observations (spots)
- 2,318
- Tier
- silver
- Chemistry
- Visium v1
- Resolution
- 1,994 × 2,000 px
- mpp
- 3.426 µm/px
- Size
- 14.7 MB
- Sample ID
- GSM9936458
- License
- NCBI GEO policy
- Published
- Aug 24, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB