Visium
Mouse adipose tissue
Spatial Transcriptomics of AAV Overexpression Mice Adipose: Integrated 10x Visium and Morphological Segmentation Dataset for ITIH5 Analysis (HF_4_LO_2)
bronze Interactive viewer H&E Provisional
print(sdata)
SpatialData object
├── Images
│ ├── 'HF_4_LO_2_hires_image': DataArray[cyx] (3, 1950, 2000)
│ └── 'HF_4_LO_2_lowres_image': DataArray[cyx] (3, 585, 600)
├── Shapes
│ └── 'HF_4_LO_2': GeoDataFrame shape: (4992, 2) (2D shapes)
└── Tables
└── 'table': AnnData (4992, 19465)
with coordinate systems:
▸ 'HF_4_LO_2', with elements:
HF_4_LO_2_hires_image (Images), HF_4_LO_2_lowres_image (Images), HF_4_LO_2 (Shapes)
▸ 'HF_4_LO_2_downscaled_hires', with elements:
HF_4_LO_2_hires_image (Images), HF_4_LO_2 (Shapes)
▸ 'HF_4_LO_2_downscaled_lowres', with elements:
HF_4_LO_2_lowres_image (Images), HF_4_LO_2 (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("VwbS8QTyrKNoeZth0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("VwbS8QTyrKNoeZth") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download VwbS8QTyrKNoeZth0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/VwbS8QTyrKNoeZth
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid VwbS8QTyrKNoeZthLicense: CC BY 4.0
Metadata
- Technology
- Visium
- Vendor
- 10x Genomics
- Organism
- mouse
- Tissue
- adipose tissue
- Modality
- RNA
- Observations (spots)
- 4,992
- Tier
- bronze
- Chemistry
- Visium v1
- Resolution
- 2,000 × 1,950 px
- mpp
- 3.284 µm/px
- Size
- 43.9 MB
- Sample ID
- 31383028:HF_4_LO_2
- License
- CC BY 4.0
- Published
- Feb 20, 2026
Cite this dataset
doi.org/10.6084/m9.figshare.31383028.v1 ↗ BibTeX
@article{figshare:31383028,
doi = {10.6084/m9.figshare.31383028.v1},
title = {Spatial Transcriptomics of AAV Overexpression Mice Adipose: Integrated 10x Visium and Morphological Segmentation Dataset for ITIH5 Analysis (HF_4_LO_1)},
year = {2026}
}Source: figshare.com ↗ · License: CC BY 4.0 ↗ · Reprocessed to SpatialData by SpatialData-DB