Collections / figshare-31383028

figshare-31383028

Datasets4
Size~234 MB
TechnologyVisium
Samplemouse · adipose tissue
KindPublication
Flag a data issue
10.6084/m9.figshare.31383028.v1 ↗
Python · sddb client
from sddb import Catalog

cohort = Catalog().collection("figshare-31383028")
cohort.members        # the 4 datasets as a table

print(cohort.licenses())              # check the terms before you download

sdatas = cohort.to_dict()             # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/")
Python · lamindb

Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.

import lamindb as ln

db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="figshare-31383028")
coll.ordered_artifacts.to_dataframe()   # the 4 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
Shell
# sddb client: download every member .zarr into data/
sddb-cli download --collection figshare-31383028 --dest data/

Licenses: 4 CC BY 4.0

Open in Vitessce
Visium
Mouse adipose tissue
Spatial Transcriptomics of AAV Overexpression Mice Adipose: Integrated 10x Visium and Morphological Segmentation Dataset for ITIH5 Analysis (HF_4_LO_1)
mouse adipose tissue 49.7 MB 4,992 spots bronze H&E
TechnologyVisium
Organismmouse
Tissueadipose tissue
Size49.7 MB
Spots4,992
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse adipose tissue
Spatial Transcriptomics of AAV Overexpression Mice Adipose: Integrated 10x Visium and Morphological Segmentation Dataset for ITIH5 Analysis (HF_3_2RX_2)
mouse adipose tissue 72.0 MB 4,992 spots bronze H&E
TechnologyVisium
Organismmouse
Tissueadipose tissue
Size72.0 MB
Spots4,992
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse adipose tissue
Spatial Transcriptomics of AAV Overexpression Mice Adipose: Integrated 10x Visium and Morphological Segmentation Dataset for ITIH5 Analysis (HF_4_LO_2)
mouse adipose tissue 43.9 MB 4,992 spots bronze H&E
TechnologyVisium
Organismmouse
Tissueadipose tissue
Size43.9 MB
Spots4,992
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse adipose tissue
Spatial Transcriptomics of AAV Overexpression Mice Adipose: Integrated 10x Visium and Morphological Segmentation Dataset for ITIH5 Analysis (HF_3_2RX_1)
mouse adipose tissue 68.2 MB 4,992 spots bronze H&E
TechnologyVisium
Organismmouse
Tissueadipose tissue
Size68.2 MB
Spots4,992
bronze H&E Open in Vitessce

Cite this collection

No linked publication found — please cite the data source.