PhenoCycler-Fusion
Human tonsil
S-BIAD2491:250902_Fresh_Slide4_Storageconditions_Scan1
silver Interactive viewer No linked publication
print(sdata)
SpatialData object
├── Images
│ └── '250902_Fresh_Slide4_Storageconditions_image': DataTree[cyx] (18, 10800, 17280), (18, 5400, 8640), (18, 2700, 4320), (18, 1350, 2160), (18, 675, 1080)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (289534, 1) (2D shapes)
│ └── 'cell_boundaries_for_vitessce': GeoDataFrame shape: (289534, 2) (2D shapes)
└── Tables
└── 'table': AnnData (289534, 18)
with coordinate systems:
▸ 'global', with elements:
250902_Fresh_Slide4_Storageconditions_image (Images), cell_boundaries (Shapes), cell_boundaries_for_vitessce (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("frZJqc459F4cdz200000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("frZJqc459F4cdz20") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download frZJqc459F4cdz200000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/frZJqc459F4cdz20
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid frZJqc459F4cdz20License: CC0 1.0
Metadata
- Technology
- PhenoCycler-Fusion
- Organism
- human
- Tissue
- tonsil
- Modality
- protein
- Observations (cells)
- 289,534
- Tier
- silver
- Chemistry
- PhenoCycler-Fusion 2
- Staining
- IF
- Size
- 3.7 GB
- Sample ID
- S-BIAD2491:250902_Fresh_Slide4_Storageconditions_Scan1
- License
- CC0 1.0
- Published
- Dec 23, 2025
Cite this dataset
No linked publication found — please cite the data source: BioImage Archive ↗.
Source: BioImage Archive ↗ · License: CC0 1.0 ↗ · Reprocessed to SpatialData by SpatialData-DB