Human tonsil
S-BIAD2491:250902_Fresh_Slide4_Storageconditions_Scan1
human tonsil 3.7 GB 289,534 cells silver CC0 1.0
TechnologyPhenoCycler-Fusion
Organismhuman
Tissuetonsil
Cells289,534
silver CC0 1.0
Collections / bia-s-biad2491
bia-s-biad2491
Datasets2
Size~7.5 GB
AssayPhenoCycler-Fusion
Samplehuman · tonsil
KindOther
Download the whole collection
Python · sddb client
from sddb import Catalog
cohort = Catalog().collection("bia-s-biad2491")
cohort.members # the 2 datasets as a table
print(cohort.licenses()) # check the terms before you download
sdatas = cohort.to_dict() # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/") Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="bia-s-biad2491")
coll.ordered_artifacts.to_dataframe() # the 2 members, ordered
# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()] Shell
# sddb client: download every member .zarr into data/
sddb-cli download --collection bia-s-biad2491 --dest data/Licenses: 2 CC0 1.0
Member datasets · 2