Collections / geo-gse275026

geo-gse275026

Datasets8
Size~327 MB
AssayVizgen MERSCOPE
Samplemouse · brain
KindPublication
Flag a data issue
10.1038/s41586-025-09662-z ↗
Python · sddb client
from sddb import Catalog

cohort = Catalog().collection("geo-gse275026")
cohort.members        # the 8 datasets as a table

print(cohort.licenses())              # check the terms before you download

sdatas = cohort.to_dict()             # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/")
Python · lamindb

Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.

import lamindb as ln

db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="geo-gse275026")
coll.ordered_artifacts.to_dataframe()   # the 8 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
Shell
# sddb client: download every member .zarr into data/
sddb-cli download --collection geo-gse275026 --dest data/

Licenses: 8 NCBI GEO policy

Lymphoid gene expression supports neuroprotective microglia function.

Microglia, the innate immune cells of the brain, play a defining role in the progression of Alzheimer's disease (AD)<sup>1</sup>. The microglial response to amyloid plaques in AD can range from neuroprotective to neurotoxic<sup>2</sup>. Here we show that the protective function of microglia is governed by the transcription factor PU.1, which becomes downregulated following microglial contact with plaques. Lowering PU.1 expression in microglia reduces the severity of amyloid disease pathology in mice and is linked to the expression of immunoregulatory lymphoid receptor proteins, particularly CD28, a surface receptor that is critical for T cell activation<sup>3,4</sup>. Microglia-specific deficiency in CD28, which is expressed by a small subset of plaque-associated PU.1<sup>low</sup> microglia, promotes a broad inflammatory microglial state that is associated with increased amyloid plaque load. Our findings indicate that PU.1<sup>low</sup> CD28-expressing microglia may operate as suppressive microglia that mitigate the progression of AD by reducing the severity of neuroinflammation. This role of CD28 and potentially other lymphoid co-stimulatory and co-inhibitory receptor proteins in governing microglial responses in AD points to possible immunotherapy approaches for treating the disease by promoting protective microglial functions.

Open in Vitessce
Vizgen MERSCOPE
Mouse brain
GSM8970742
mouse brain 50.5 MB 126,024 cells silver NCBI GEO policy
TechnologyVizgen MERSCOPE
Organismmouse
Tissuebrain
Size50.5 MB
Cells126,024
silver NCBI GEO policy Open in Vitessce
Open in Vitessce
Vizgen MERSCOPE
Mouse brain
GSM8464547
mouse brain Alzheimer disease 47.0 MB 124,048 cells silver NCBI GEO policy
TechnologyVizgen MERSCOPE
Organismmouse
Tissuebrain
ConditionAlzheimer disease
Size47.0 MB
Cells124,048
silver NCBI GEO policy Open in Vitessce
Open in Vitessce
Vizgen MERSCOPE
Mouse brain
GSM8970744
mouse brain Alzheimer disease 38.9 MB 120,318 cells silver NCBI GEO policy
TechnologyVizgen MERSCOPE
Organismmouse
Tissuebrain
ConditionAlzheimer disease
Size38.9 MB
Cells120,318
silver NCBI GEO policy Open in Vitessce
Open in Vitessce
Vizgen MERSCOPE
Mouse brain
GSM8464545
mouse brain Alzheimer disease 42.2 MB 120,378 cells silver NCBI GEO policy
TechnologyVizgen MERSCOPE
Organismmouse
Tissuebrain
ConditionAlzheimer disease
Size42.2 MB
Cells120,378
silver NCBI GEO policy Open in Vitessce
Open in Vitessce
Vizgen MERSCOPE
Mouse brain
GSM8464548
mouse brain Alzheimer disease 35.0 MB 113,880 cells silver NCBI GEO policy
TechnologyVizgen MERSCOPE
Organismmouse
Tissuebrain
ConditionAlzheimer disease
Size35.0 MB
Cells113,880
silver NCBI GEO policy Open in Vitessce
Open in Vitessce
Vizgen MERSCOPE
Mouse brain
GSM8464546
mouse brain Alzheimer disease 32.1 MB 103,501 cells silver NCBI GEO policy
TechnologyVizgen MERSCOPE
Organismmouse
Tissuebrain
ConditionAlzheimer disease
Size32.1 MB
Cells103,501
silver NCBI GEO policy Open in Vitessce
Open in Vitessce
Vizgen MERSCOPE
Mouse brain
GSM8464544
mouse brain 45.8 MB 112,993 cells silver NCBI GEO policy
TechnologyVizgen MERSCOPE
Organismmouse
Tissuebrain
Size45.8 MB
Cells112,993
silver NCBI GEO policy Open in Vitessce
Open in Vitessce
Vizgen MERSCOPE
Mouse brain
GSM8970743
mouse brain Alzheimer disease 35.0 MB 131,251 cells silver NCBI GEO policy
TechnologyVizgen MERSCOPE
Organismmouse
Tissuebrain
ConditionAlzheimer disease
Size35.0 MB
Cells131,251
silver NCBI GEO policy Open in Vitessce

Cite this collection

No linked publication found — please cite the data source.