Visium
Human synovial membrane of synovial joint
GSM10060712
silver Interactive viewer H&E rheumatoid arthritis No linked publication
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM10060712_S74_CT_511_A-1-2_RA_Synovium_hires_image': DataArray[cyx] (3, 1864, 2000)
│ └── 'GSM10060712_S74_CT_511_A-1-2_RA_Synovium_lowres_image': DataArray[cyx] (3, 559, 600)
├── Shapes
│ └── 'GSM10060712_S74_CT_511_A-1-2_RA_Synovium': GeoDataFrame shape: (1184, 2) (2D shapes)
└── Tables
└── 'table': AnnData (1184, 18085)
with coordinate systems:
▸ 'GSM10060712_S74_CT_511_A-1-2_RA_Synovium', with elements:
GSM10060712_S74_CT_511_A-1-2_RA_Synovium_hires_image (Images), GSM10060712_S74_CT_511_A-1-2_RA_Synovium_lowres_image (Images), GSM10060712_S74_CT_511_A-1-2_RA_Synovium (Shapes)
▸ 'GSM10060712_S74_CT_511_A-1-2_RA_Synovium_downscaled_hires', with elements:
GSM10060712_S74_CT_511_A-1-2_RA_Synovium_hires_image (Images), GSM10060712_S74_CT_511_A-1-2_RA_Synovium (Shapes)
▸ 'GSM10060712_S74_CT_511_A-1-2_RA_Synovium_downscaled_lowres', with elements:
GSM10060712_S74_CT_511_A-1-2_RA_Synovium_lowres_image (Images), GSM10060712_S74_CT_511_A-1-2_RA_Synovium (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("wk5wLtFKfxmRa4Gu0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("wk5wLtFKfxmRa4Gu") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download wk5wLtFKfxmRa4Gu0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/wk5wLtFKfxmRa4Gu
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid wk5wLtFKfxmRa4GuLicense: NCBI GEO policy
Part of collection
Spatial multi-omics identifies rheumatoid arthritis synovial niches and de-novo laminar histological patterns of fibroblasts subtypes→ 11 datasets · comparison
Metadata
- Technology
- Visium
- Organism
- human
- Tissue
- synovial membrane of synovial joint
- Condition
- rheumatoid arthritis
- Modality
- RNA
- Observations (spots)
- 1,184
- Tier
- silver
- Chemistry
- Visium v1
- Resolution
- 2,000 × 1,864 px
- mpp
- 3.219 µm/px
- Size
- 5.0 MB
- Sample ID
- GSM10060712
- License
- NCBI GEO policy
- Published
- Oct 12, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB