Visium
Human synovial membrane of synovial joint
GSM10060717
silver H&E rheumatoid arthritis No linked publication
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM10060717_S79_CT_514_A-1-3_RA_Synovium_hires_image': DataArray[cyx] (3, 2000, 1722)
│ └── 'GSM10060717_S79_CT_514_A-1-3_RA_Synovium_lowres_image': DataArray[cyx] (3, 600, 517)
├── Shapes
│ └── 'GSM10060717_S79_CT_514_A-1-3_RA_Synovium': GeoDataFrame shape: (488, 2) (2D shapes)
└── Tables
└── 'table': AnnData (488, 18085)
with coordinate systems:
▸ 'GSM10060717_S79_CT_514_A-1-3_RA_Synovium', with elements:
GSM10060717_S79_CT_514_A-1-3_RA_Synovium_hires_image (Images), GSM10060717_S79_CT_514_A-1-3_RA_Synovium_lowres_image (Images), GSM10060717_S79_CT_514_A-1-3_RA_Synovium (Shapes)
▸ 'GSM10060717_S79_CT_514_A-1-3_RA_Synovium_downscaled_hires', with elements:
GSM10060717_S79_CT_514_A-1-3_RA_Synovium_hires_image (Images), GSM10060717_S79_CT_514_A-1-3_RA_Synovium (Shapes)
▸ 'GSM10060717_S79_CT_514_A-1-3_RA_Synovium_downscaled_lowres', with elements:
GSM10060717_S79_CT_514_A-1-3_RA_Synovium_lowres_image (Images), GSM10060717_S79_CT_514_A-1-3_RA_Synovium (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("BSsQr8JDUQUvalfL0001")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("BSsQr8JDUQUvalfL") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download BSsQr8JDUQUvalfL0001 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/BSsQr8JDUQUvalfL
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid BSsQr8JDUQUvalfLLicense: NCBI GEO policy
Part of collection
Spatial multi-omics identifies rheumatoid arthritis synovial niches and de-novo laminar histological patterns of fibroblasts subtypes→ 11 datasets · comparison
Metadata
- Technology
- Visium
- Organism
- human
- Tissue
- synovial membrane of synovial joint
- Condition
- rheumatoid arthritis
- Modality
- RNA
- Observations (spots)
- 488
- Tier
- silver
- Chemistry
- Visium v1
- Resolution
- 1,722 × 2,000 px
- mpp
- 2.807 µm/px
- Size
- 12.3 MB
- Sample ID
- GSM10060717
- License
- NCBI GEO policy
- Published
- Oct 12, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB