Visium
Mouse skeletal muscle tissue
GSM9312233
silver Interactive viewer H&E No linked publication
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM9312233_WT_IF_1_hires_image': DataArray[cyx] (3, 1989, 2000)
│ └── 'GSM9312233_WT_IF_1_lowres_image': DataArray[cyx] (3, 597, 600)
├── Shapes
│ └── 'GSM9312233_WT_IF_1': GeoDataFrame shape: (2448, 2) (2D shapes)
└── Tables
└── 'table': AnnData (2448, 32285)
with coordinate systems:
▸ 'GSM9312233_WT_IF_1', with elements:
GSM9312233_WT_IF_1_hires_image (Images), GSM9312233_WT_IF_1_lowres_image (Images), GSM9312233_WT_IF_1 (Shapes)
▸ 'GSM9312233_WT_IF_1_downscaled_hires', with elements:
GSM9312233_WT_IF_1_hires_image (Images), GSM9312233_WT_IF_1 (Shapes)
▸ 'GSM9312233_WT_IF_1_downscaled_lowres', with elements:
GSM9312233_WT_IF_1_lowres_image (Images), GSM9312233_WT_IF_1 (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("pmorJpFe54YinMRE0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("pmorJpFe54YinMRE") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download pmorJpFe54YinMRE0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/pmorJpFe54YinMRE
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid pmorJpFe54YinMRELicense: NCBI GEO policy
Part of collection
Use of Organ Transplant Solution to Preserve Skeletal Muscle for Cellular and Spatial Transcriptomic Analyses→ 8 datasets · comparison
Metadata
- Technology
- Visium
- Organism
- mouse
- Tissue
- skeletal muscle tissue
- Modality
- RNA
- Observations (spots)
- 2,448
- Tier
- silver
- Chemistry
- Visium v1
- Resolution
- 2,000 × 1,989 px
- mpp
- 3.087 µm/px
- Size
- 22.2 MB
- Sample ID
- GSM9312233
- License
- NCBI GEO policy
- Published
- May 14, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB