Visium
Human pleura
GSM9069589
silver Interactive viewer H&E malignant pleural mesothelioma No linked publication
print(sdata)
SpatialData object
├── Images
│ ├── 'PBC_PR_6837_hires': DataArray[cyx] (3, 1850, 2000)
│ └── 'PBC_PR_6837_lowres': DataArray[cyx] (3, 555, 600)
├── Shapes
│ └── 'locations': GeoDataFrame shape: (4942, 2) (2D shapes)
└── Tables
└── 'table': AnnData (4942, 18085)
with coordinate systems:
▸ 'PBC_PR_6837_hires', with elements:
PBC_PR_6837_hires (Images), locations (Shapes)
▸ 'PBC_PR_6837_lowres', with elements:
PBC_PR_6837_lowres (Images), locations (Shapes)
▸ 'global', with elements:
PBC_PR_6837_hires (Images), PBC_PR_6837_lowres (Images), locations (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("4U0zxr2zzgO2tneo0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("4U0zxr2zzgO2tneo") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download 4U0zxr2zzgO2tneo0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/4U0zxr2zzgO2tneo
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid 4U0zxr2zzgO2tneoLicense: NCBI GEO policy
Metadata
- Technology
- Visium
- Organism
- human
- Tissue
- pleura
- Condition
- malignant pleural mesothelioma
- Modality
- RNA
- Observations (spots)
- 4,942
- Tier
- silver
- Chemistry
- Visium CytAssist v2
- Resolution
- 2,000 × 1,850 px
- mpp
- 11.811 µm/px
- Size
- 98.3 MB
- Sample ID
- GSM9069589
- License
- NCBI GEO policy
- Published
- Apr 22, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB