Visium
Rat lung
GSM9339560
bronze Interactive viewer H&E pulmonary fibrosis Provisional
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM9339560_V11Y17-314-C1_hires_image': DataArray[cyx] (3, 1934, 2000)
│ └── 'GSM9339560_V11Y17-314-C1_lowres_image': DataArray[cyx] (3, 580, 600)
├── Shapes
│ └── 'GSM9339560_V11Y17-314-C1': GeoDataFrame shape: (4057, 2) (2D shapes)
└── Tables
└── 'table': AnnData (4057, 25199)
with coordinate systems:
▸ 'GSM9339560_V11Y17-314-C1', with elements:
GSM9339560_V11Y17-314-C1_hires_image (Images), GSM9339560_V11Y17-314-C1_lowres_image (Images), GSM9339560_V11Y17-314-C1 (Shapes)
▸ 'GSM9339560_V11Y17-314-C1_downscaled_hires', with elements:
GSM9339560_V11Y17-314-C1_hires_image (Images), GSM9339560_V11Y17-314-C1 (Shapes)
▸ 'GSM9339560_V11Y17-314-C1_downscaled_lowres', with elements:
GSM9339560_V11Y17-314-C1_lowres_image (Images), GSM9339560_V11Y17-314-C1 (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("LlMG9s1mOl4xma2F0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("LlMG9s1mOl4xma2F") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download LlMG9s1mOl4xma2F0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/LlMG9s1mOl4xma2F
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid LlMG9s1mOl4xma2FLicense: NCBI GEO policy
Metadata
- Technology
- Visium
- Organism
- rat
- Tissue
- lung
- Condition
- pulmonary fibrosis
- Modality
- RNA
- Observations (spots)
- 4,057
- Tier
- bronze
- Chemistry
- Visium v1
- Resolution
- 2,000 × 1,934 px
- mpp
- 3.457 µm/px
- Size
- 45.7 MB
- Sample ID
- GSM9339560
- License
- NCBI GEO policy
- Published
- Dec 15, 2025
Cite this dataset
doi.org/10.1038/s41467-025-68003-w ↗ BibTeX
@article{geo:GSM9339560,
doi = {10.1038/s41467-025-68003-w},
title = {GSM9339560},
year = {2026}
}Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB