Visium
Human kidney
GSM9231919
bronze Interactive viewer H&E diabetic kidney disease Provisional

print(sdata)
SpatialData object
├── Images
│ ├── 'GSM9231919_V42N07-395_XY04_IU94_hires_image': DataArray[cyx] (3, 535, 2000)
│ └── 'GSM9231919_V42N07-395_XY04_IU94_lowres_image': DataArray[cyx] (3, 161, 600)
├── Shapes
│ └── 'GSM9231919_V42N07-395_XY04_IU94': GeoDataFrame shape: (437, 2) (2D shapes)
└── Tables
└── 'table': AnnData (437, 18085)
with coordinate systems:
▸ 'GSM9231919_V42N07-395_XY04_IU94', with elements:
GSM9231919_V42N07-395_XY04_IU94_hires_image (Images), GSM9231919_V42N07-395_XY04_IU94_lowres_image (Images), GSM9231919_V42N07-395_XY04_IU94 (Shapes)
▸ 'GSM9231919_V42N07-395_XY04_IU94_downscaled_hires', with elements:
GSM9231919_V42N07-395_XY04_IU94_hires_image (Images), GSM9231919_V42N07-395_XY04_IU94 (Shapes)
▸ 'GSM9231919_V42N07-395_XY04_IU94_downscaled_lowres', with elements:
GSM9231919_V42N07-395_XY04_IU94_lowres_image (Images), GSM9231919_V42N07-395_XY04_IU94 (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("D1Jra8uvfL6bc2Vn0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("D1Jra8uvfL6bc2Vn") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download D1Jra8uvfL6bc2Vn0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/D1Jra8uvfL6bc2Vn
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid D1Jra8uvfL6bc2Vn License: NCBI GEO policy
Part of collection
A MEF2C transcription factor network regulates proliferation of glomerular endothelial cells in diabetic kidney disease→ 12 datasets · other
Metadata
- Technology
- Visium
- Organism
- human
- Tissue
- kidney
- Condition
- diabetic kidney disease
- Modality
- RNA
- Observations (spots)
- 437
- Tier
- bronze
- Chemistry
- Visium v1
- Magnification
- other
- Resolution
- 2,000 × 535 px
- mpp
- 5.272 µm/px
- Size
- 14.0 MB
- Sample ID
- GSM9231919
- License
- NCBI GEO policy
- Published
- May 21, 2026
Cite this dataset
doi.org/10.1016/j.kint.2026.03.020 ↗ BibTeX
@article{Melo_Ferreira_2026,
title = {A MEF2C transcription factor network regulates proliferation of glomerular endothelial cells in diabetic kidney disease},
volume = {110},
ISSN = {0085-2538},
url = {http://dx.doi.org/10.1016/j.kint.2026.03.020},
DOI = {10.1016/j.kint.2026.03.020},
number = {1},
journal = {Kidney International},
publisher = {Elsevier BV},
author = {Melo Ferreira, Ricardo and Gisch, Debora L. and Phillips, Carrie L. and Cheng, Ying-Hua and Lucarelli, Nicholas and Yennapureddy, Soumya and Asthana, Maansi and Lake, Blue B. and Bowen, William S. and Fang, Fang and Asghari, Mahla and Sabo, Angela and Barwinska, Daria and Ferkowicz, Michael J. and Toto, Robert D. and Sedor, John R. and Rosas, Sylvia E. and Bjornstad, Petter and Hodgin, Jeffrey B. and Alpers, Charles E. and Sarder, Pinaki and Himmelfarb, Jonathan and Schaub, Jennifer A. and Nair, Viji and Winfree, Seth and Sutton, Timothy A. and Kelly, Katherine J. and Adeyi, Oyedele A. and Ai, Lun and Narayana, Sheelashree Ajakkala and Alakwaa, Fadhl and Alexandrov, Theodore and Allen, Jamie L. and Alpers, C.E. and Alvear, Alison Bunio and Ambekar, Akhil and Ancheta, Joed and Anderton, Christopher R. and Andre, Makayla and Angus, Sophia A. and Anjani, Kavya and Annese, Francesca and Appelbaum, Paul S. and Ardayfio, Joseph and Arora, Tanima and Ascani, Heather K. and Asghari, Mahla and El-Achkar, Tarek M. and Atta, Mohamed G. and Atwell, Thomas D. and Aulisio, Mark P. and Aw, Stephanie J. and Azeloglu, Evren U. and Babaie, Mona and Bagne, Cathy A. and Balderes, Olivia and Balis, Ulysses G.J. and Barasch, Jonathan and Barik, Mitali and Barisoni, Laura and Barkmeier, Andrew J. and Barwinska, Daria and Basta, Jeannine and Bebiak, Jack and Beck, Laurence H. and Berge, Jerica M. and Berglund, Ashley C. and Bernard, Lauren and Berry, Brooke and Beyda, David H. and Bhanushali, Jini Ashok and Bitzer, Markus and Bjornstad, Petter and Blanc, Victoria M. and Blank, Kristina N. and Bledsoe, Sharon B. and Bogen, Steve and Bomback, Andrew S. and Bonevich, Nikole and Booth, Chloe E. and Border, Samuel and Börner, Katy and Bowen, William S. and Boys, Charlotte and Bracamonte, Erika R. and Brosius, Frank C. and Brown, Keith D. and Brown, Liam and Bu, Lihong and Budiman, Tifanny and Bueckle, Andreas and Bui, James T. and Burg, Ashley R. and Burgess, Adam and Bush, Lakeshia and Bush, William S. and Buth, Erin J. and Cai, Qi and Calixte, Marie Florence and Cameron-Wheeler, Tashas and Campbell, Kirk N. and Campbell, Taneisha and Campbell, Catherine and Campos, Baltazar and Canetta, Pietro A. and Cantley, Lloyd G. and Caramori, M. Luiza and Carmona-Powell, Eunice and Carson, Jonas M. and Chan, Gek Cher and Chan, Lili and Chen, Jia-Yun and Chen, Sarah W. and Chen, Xi and Chen, Yijiang and tao cheng and Cheng, Ying-Hua and Bejarano, Maria Chilo and Moaz, Choudhary and Cimino, James G. and Coca, Steven G. and Coffman, Thomas M. and Coleman, Alyson and Colley, Madeline E. and Collie, Mary M. and Colona, Mia R. and Conlon, Kristine and Conser, Ninive and Cooperman, Leslie and Corona-Villalobos, Celia P. and Crawford, Dana C. and Creger, Nathan and Cuevas-Rios, Yarieli and D’Agati, Vivette and D’Souza, Donna and Dagher, Pierre C. and de Boer, Ian H. and de Caestecker, M.P. and de Cos, Marina and Gonçalves, Joana P. and Dekker, Matthew and Demeke, Dawit and Deng, Ruining and Denic, Aleksandar and Derma, Austin and Dighe, Ashveena L. and Ding, Yanli and Djambazova, Katerina V. and Donohoe, Isabel and Dowd, Frederick and PE, Drawz and Dufresne, Martin and Dull, Rachel and Dunn, Kenneth W. and Duran, Daniel Damian and Eadon, Michael T. and Eddy, Sean and Elder, Michele M. and Evo-Ortega, Lorraine and Fallegger, Robin and Farrow, Melissa A. and Ferkowicz, Michael and Fermin, Damian and Fine, Derek M. and Flanagan, Siobhan M. and Fogo, Agnes B. and Fox, Monica L. and Frey, Renee and Froment, Anne and Gaba, Ron C. and Gadegbeku, Crystal A. and Gai, Lili and Gamez, Griselda and Gaut, Joseph P. and Gebre, Kifle and Gehlenborg, Nils and Gentry, Ann and Geraghty, Molly C. and Ghag, Reetika and Gilliam, Matthew and Ginley, Brandon and Gisch, Debora and Gordon, Ronald E. and Gorman, Brittney L. and Green, Mark L. and Greka, Anna and Grewenow, Stephanie M. and Gupta, Ritu and Gurung, Bhupendra Kumar and Guthrie, Leah and Hacohen, Nir and Haddad, Samuel and Hall, Daniel E. and Hansen, Jens and Haque, Zaafira and Harindhanavudhi, Tasma and Hartley, Josh and Hartman, John and Hayashi, Lynda and Haydak, Jonathan and He, John Cijiang and He, Yongqun and Hedayati, S. Susan and Henderson, Dori and Henderson, Joel M. and Hendricks, Allen R. and Henshaw, Asari and Herlitz, Leal and Hernandez, Jeanine and Herr, Bruce W. and Himmelfarb, Jonathan and Hodgin, Jeffrey B. and Hoofnagle, Andrew N. and Horowitz, Carol R. and Hsieh, E.W.Y. and Huo, Yuankai and Huynh, Courtney and Iyengar, Ravi and Jain, Sanjay and Janosevic, Danielle and Janowczyk, Andrew and Jeffers, Vivian and Jefferson, J. Ashley and Jefferson, Nichole M. and Jennette, J. Charles and Johansen, Camille and Jolly, Stacey and Jones, Christopher J. and Jones, Jennifer L. and Jones, Kiasha and Joyeux, Cienn N. and Ju, Wenjun and Kakade, Vijayakumar R. and Kakarla, Dhatri and Kalil, Badra and Kalva, Sanjeeva P. and Kaspari, Rachel R. and Kaur, Ravinder Jeet and Kaushal, Madhurima and Keefe, Nicole and Keller, Mark S. and Kelley, Sara S. and Kellum, John A. and Kelly, K.J. and Kelly, Tanika N. and Kent, Candice A. and Kermani, Asra and Kim, Taesoo and Kiryluk, Krzysztof and Klett, Susan and Knight, Richard A. and Knoten, Amanda and Koch, Gina and Koewler, Robert and Kovatch, Patricia and Kretzler, Matthias and Kruse, Angela R.S. and Kudva, Yogish C. and Kukla, Aleksandra and Kuperman, Michael and Kurek, Corey and Küchenhoff, Leonie and L, Asmita and Lake, Blue B. and Lardenoije, Roy and Larson, Astrid and Larson, Brandon G. and Lash, James P. and Laszik, Zoltan G. and Latt, Khun Zaw and Lecker, Stewart H. and Lee, Dongwon and Lee, Simon C. and Lee, Sora and Lefferts, Sean and Leite, Petra M. and Lerman, Lilach O. and Leroux, Melissa and Li, Xiang and Lienczewski, Chrysta C. and Limonte, Christine P. and Lin, Jia-Ren and Liu, Lili and Kovatch, Patricia and Livingood, Daine and Lu, Minxin and Lucarelli, Nicholas and Lukowski, Jessica and Lum, Dawn M. and Lutnick, Brendon and Ma, Shihong and Ma, Sisi and Madabhushi, Anant and Maikhor, Shana and Maity, Soumya and Mandel, Mallory and Mansour, Iyad S. and Mao, Weiguang and Mariani, Laura H. and Markovic, Marina and Marquez, Nicole and Marshall, Jamie L. and McAdams, Meredith C. and McClelland, Robyn L. and McCown, Phillip J. and McGowan, Michelle L. and McMahon, Gearoid Michael and McMurray, Amy and Mehl, Karla and Meliambro, Kristin and Ferreira, Ricardo Melo and Mendoza, Katherine and Menez, Steven and Menon, Rajasree and Meram, Ece and Meza, Natalie and Migas, Lukasz G. and Miller, Chloe E. and Miller, R. Tyler and Mimar, Sayat and Minor, Brittany C. and Mody, Priya and Moeckel, Gilbert W. and Moledina, D.G. and Molina-Guzman, Jenny and Monroy-Trujillo, Jose M. and Morales, Alexander and Moreno, Brenda and Moreno, Vanessa and Mottl, Amy K. and Moultrie, Keyvona and Mukatash, Tariq and Munar, Dane and Murugan, Raghavan and Nachman, Patrick H. and Nadkarni, Girish N. and Naglah, Ahmed and Naik, Abhijit S. and Nair, Viji and Najafian, Behzad and Nam, Yunbi and Nanamatsu, Azuma and Narasimhan, R. and Nguyen, Nhung and Nwanne, Gerald and O’Malley, Charles and O’Toole, John F. and Toro, Fernanda Ochoa and Oliver, George (Holt) and Oluwole, Oluwatosin and Onul, Ingrid F. and Otto, Edgar A. and Palevsky, Paul M. and Palmer, Ellen and Pamreddy, Annapurna and Parikh, Chirag R. and Parikh, Samir V. and Park, Christopher and Park, Harold and Paša-Tolić, Ljiljana and Patel, Jiten and Patel, Marissa and Patlis, Boris S. and Paul, Anindya S. and Pham, Thai and Phuong, Jimmy and Pillai, Anil and Pinkeney, Roy and Plisiewicz, Alexa and Poggio, Emilio D. and Pollack, Ari and Prasad, Pottumarthi V. and Pyle, Laura and Quardokus, Ellen M. and Quinn, Timothy D. and Quiroga, Arabela and Rabi, Salma and Ragi, Nagarjunachary and Randhawa, Parmjeet and Randle, Teresa and Rao, Tejas and Rao, Via and Rauchman, Michael and Rauwolf, Nicolas J. and Reamy, Rebecca and Record, Elizabeth G. and Redmond, Devona and Reinert, Stephanie and Reis, Joseph and Rennke, Helmut and Renteria, Amada and Rezaei, Kasra A. and Rhodes, Rosamond and Ricardo, Ana C. and Rivera, Marcelino and Roberts, Glenda V. and Robinson-Cohen, Cassianne and Rogers, Elizabeth A. and Rojas-Miguez, Florencia A. and Rosan, Sophia H. and Rosas, Sylvia E. and Rose, Michael P. and Rosen, Seymour and Rosenberg, Avi Z. and Rosenberg, Michael S. and Rosengart, Matthew R. and Rovin, Brad H. and Roy, Neil and Roy-Chaudhury, Prabir and Rubinsky, Melissa D. and Sabo, Angela R. and Sadusky, Tami and Saez-Rodriguez, Julio and Safadi, Sami and Samari, Imane H. and Sanora, Ana Celina and Santagata, Sandro and Sarder, Pinaki and Sarkisova, Natalya and Sarwal, Minnie M. and Saul, John and Saunders, Milda R. and Schaub, Jennifer A. and Schmidt, I.M. and Scott, Raymond and Scroggins, Aaron and Sealfon, Rachel S.G. and Sedor, John R. and Sendrey, Dianna and Sethi, Maninderpal S. and Sethi, Sanjeev and Setty, Suman and Shah, Sonya and Shariff, Saad Mohammed and Sharma, Kumar and Sharma, Sandeep and Shaw, Melissa M. and Sigdel, Tara K. and Silva, Kim and Silva, Paolo S. and Sisay, Emnet and Smith, Cathy and Smith, Kelly D. and Snyder, Jaime and Snyder, Michelle L. and Sohail, Mohammad A. and Sokolova, Ksenia and Spates-Harden, Kassandra and Sperati, C. John and Spraggins, Jeffrey M. and Srivastava, Anand and Stalbow, Daniel and Stashevsky, Jennifer and Stawicki, Anna Kate and Steck, Becky and Stillman, Isaac E. and Stutzke, Christy and Su, Jing and Subramanian, Lalita and Sun, Jennifer K. and Rajan, Sandhya Sundar and Sutton, Timothy A. and Taliercio, Jonathan J. and Tan, Roderick and Tanevski, Jovan and Tanious, Michael and thajudeen b and Philbrook, Heather Thiessen and Thurman, Joshua M. and Tokita, Joji and Tommerdahl, Kalie L. and Torrealba, Jose R. and Toto, Robert D. and Tout, Haneen and Troyanskaya, Olga G. and Turner, Jeffrey M. and Tuttle, Katherine R. and Ugwuowo, Ugochukwu and Upadhyay, Ashish and Ustoyev, Rachel and Valerius, M. Todd and Van de Plas, Raf and Vandyk, Heidi L. and German varela and Vazquez, Miguel A. and Velickovic, Dusan and Velickovic, Marija and manjeri venkatachalam and Verdoes, Abraham and Verma, Ashish and Victoria-Castro, Angela M. and Vijayan, Anitha and Vinovskis, Carissa and Vita, Tina and Waikar, Sushrut S. and Wang, Ashley R. and Wang, Bangchen and Wang, Nancy and Wang, Ruikang and Wangperawong, Artit and Ward, Stephen C. and Warfield, Curtis and Weins, Astrid and Welch, Julia A. and Wen, Natasha and Wen, Yumeng and Wightman, Aaron and Wilcox, Adam and Williams, James C. and Williams, Kayleen and Williams, Mark E. and Wilson, F. Perry and Winfree, Seth and Winters, James and Wofford, Stephanie and Wolf, Susan M. and Wong, Aaron and Woodhead, Gregory and Wright, Devin M. and Wright, Zach and Wright, Zoe and Wrobel, Julia and Xu, Alan and Xu, Sophia and Yadati, Pranav and Yang, Johnson and Ye, Hongping and Young, Bessie A. and Yu, Guanghao and Mon-Wei Yu, Samuel and Zeinoun, Gabriel and Zeitler, Evan M. and Zhang, Bo and Zhang, Guanshi and Zhang, Kun and Zhang, Shiqi and Zhang, Yi and Zhou, Yan and Kretzler, Matthias and Jain, Sanjay and El-Achkar, Tarek M. and Dagher, Pierre C. and Eadon, Michael T.},
year = {2026},
month = July,
pages = {227–244}
} Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB