Visium
Mouse intervertebral disk
GSM9812268
silver Interactive viewer H&E No linked publication
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM9812268_IVD2_full_image': DataTree[cyx] (3, 11547, 12694), (3, 5773, 6347), (3, 2886, 3173), (3, 1443, 1586), (3, 721, 793)
│ └── 'GSM9812268_IVD2_hires_image': DataArray[cyx] (3, 1819, 2000)
├── Shapes
│ └── 'GSM9812268_IVD2': GeoDataFrame shape: (1916, 2) (2D shapes)
└── Tables
└── 'table': AnnData (1916, 19465)
with coordinate systems:
▸ 'GSM9812268_IVD2', with elements:
GSM9812268_IVD2_full_image (Images), GSM9812268_IVD2_hires_image (Images), GSM9812268_IVD2 (Shapes)
▸ 'GSM9812268_IVD2_downscaled_hires', with elements:
GSM9812268_IVD2_hires_image (Images), GSM9812268_IVD2 (Shapes)
▸ 'GSM9812268_IVD2_downscaled_lowres', with elements:
GSM9812268_IVD2 (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("PPyTtrCLrc8E6H2C0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("PPyTtrCLrc8E6H2C") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download PPyTtrCLrc8E6H2C0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/PPyTtrCLrc8E6H2C
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid PPyTtrCLrc8E6H2CLicense: NCBI GEO policy
Metadata
- Technology
- Visium
- Organism
- mouse
- Tissue
- intervertebral disk
- Modality
- RNA
- Observations (spots)
- 1,916
- Tier
- silver
- Chemistry
- Visium v1
- Resolution
- 12,694 × 11,547 px
- mpp
- 0.636 µm/px
- Size
- 373 MB
- Sample ID
- GSM9812268
- License
- NCBI GEO policy
- Published
- Jun 12, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB