Visium
Human ilium
GSM8618669
bronze Interactive viewer H&E Provisional
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM8618669_E72_03_29538_hires_image': DataArray[cyx] (3, 2000, 1414)
│ └── 'GSM8618669_E72_03_29538_lowres_image': DataArray[cyx] (3, 600, 424)
├── Shapes
│ └── 'GSM8618669_E72_03_29538': GeoDataFrame shape: (2308, 2) (2D shapes)
└── Tables
└── 'table': AnnData (2308, 36601)
with coordinate systems:
▸ 'GSM8618669_E72_03_29538', with elements:
GSM8618669_E72_03_29538_hires_image (Images), GSM8618669_E72_03_29538_lowres_image (Images), GSM8618669_E72_03_29538 (Shapes)
▸ 'GSM8618669_E72_03_29538_downscaled_hires', with elements:
GSM8618669_E72_03_29538_hires_image (Images), GSM8618669_E72_03_29538 (Shapes)
▸ 'GSM8618669_E72_03_29538_downscaled_lowres', with elements:
GSM8618669_E72_03_29538_lowres_image (Images), GSM8618669_E72_03_29538 (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("HFCrcMuhxRDCsakL0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("HFCrcMuhxRDCsakL") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download HFCrcMuhxRDCsakL0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/HFCrcMuhxRDCsakL
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid HFCrcMuhxRDCsakLLicense: NCBI GEO policy
Part of collection
single-cell multiomics data for the developing human pelvic girdle [spatial]→ 28 datasets · replicates
Metadata
- Technology
- Visium
- Organism
- human
- Tissue
- ilium
- Modality
- RNA
- Observations (spots)
- 2,308
- Tier
- bronze
- Chemistry
- Visium v1
- Magnification
- other
- Resolution
- 1,414 × 2,000 px
- mpp
- 6.430 µm/px
- Size
- 37.7 MB
- Sample ID
- GSM8618669
- License
- NCBI GEO policy
- Published
- Jul 4, 2025
Cite this dataset
doi.org/10.1038/s41586-025-09399-9 ↗ BibTeX
@article{Senevirathne_2025,
title = {The evolution of hominin bipedalism in two steps},
volume = {645},
ISSN = {1476-4687},
url = {http://dx.doi.org/10.1038/s41586-025-09399-9},
DOI = {10.1038/s41586-025-09399-9},
number = {8082},
journal = {Nature},
publisher = {Springer Science and Business Media LLC},
author = {Senevirathne, Gayani and Fernandopulle, Serena C. and Richard, Daniel and Baumgart, Stephanie L. and Christensen, Anika Liv and Fabbri, Matteo and Höppner, Jakob and Jüppner, Harald and Li, Peishu and Bothe, Vivien and Fröbisch, Nadia and Simcock, Ian and Arthurs, Owen J. and Calder, Alistair and Freilich, Naomi and Nowlan, Niamh C. and Glass, Ian A. and Craft, April and Capellini, Terence D.},
year = {2025},
month = Aug,
pages = {952–963}
}Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB