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Visium

Human heart

GSM7286753

bronze Interactive viewer H&E Provisional
Human heart preview
print(sdata) 
SpatialData object
├── Images
│     ├── 'GSM7286753_hires_image': DataArray[cyx] (3, 1940, 2000)
│     └── 'GSM7286753_lowres_image': DataArray[cyx] (3, 582, 600)
├── Shapes
│     └── 'GSM7286753': GeoDataFrame shape: (882, 2) (2D shapes)
└── Tables
      └── 'table': AnnData (882, 36601)
with coordinate systems:
    ▸ 'GSM7286753', with elements:
        GSM7286753_hires_image (Images), GSM7286753_lowres_image (Images), GSM7286753 (Shapes)
    ▸ 'GSM7286753_downscaled_hires', with elements:
        GSM7286753_hires_image (Images), GSM7286753 (Shapes)
    ▸ 'GSM7286753_downscaled_lowres', with elements:
        GSM7286753_lowres_image (Images), GSM7286753 (Shapes)
Install (Python 3.12+) Docs →
Python · sddb client 
from sddb import Catalog

ds = Catalog().dataset("giMBQluPe4uGE1iP0000")
ds.elements()          # inspect without downloading
sdata = ds.to_sdata()  # cached locally, reused
print(sdata)
Install (Python 3.12+) Docs →
Python · lamindb

Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.

import lamindb as ln

db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("giMBQluPe4uGE1iP")   # stem uid: Lamin resolves it to the latest version

sdata = artifact.load()   # cache, then load into memory
group = artifact.open()   # stream without downloading
path  = artifact.cache()  # sync into the local cache, returns the path
Install (Python 3.12+) Docs →
Shell 
# sddb client: download the .zarr into data/
sddb-cli download giMBQluPe4uGE1iP0000 --dest data/

# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/giMBQluPe4uGE1iP

# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid giMBQluPe4uGE1iP
Install (Python 3.12+) Docs →

License: NCBI GEO policy

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Metadata

Technology
Visium
Organism
human
Tissue
heart
Modality
RNA
Observations (spots)
882
Tier
bronze
Chemistry
Visium v1
Resolution
2,000 × 1,940 px
mpp
3.640 µm/px
Size
10.2 MB
Sample ID
GSM7286753
License
NCBI GEO policy
Published
May 29, 2026

Cite this dataset

doi.org/10.1093/bioinformatics/btag333 ↗
BibTeX 
@article{geo:GSM7286753,
  doi = {10.1093/bioinformatics/btag333},
  title = {GSM7286753},
  year = {2026}
}

Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB