Visium
Mouse gastrocnemius
GSM8989875
bronze Interactive viewer H&E Duchenne muscular dystrophy Provisional
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM8989875_C_S3_hires_image': DataArray[cyx] (3, 1684, 2000)
│ └── 'GSM8989875_C_S3_lowres_image': DataArray[cyx] (3, 505, 600)
├── Shapes
│ └── 'GSM8989875_C_S3': GeoDataFrame shape: (4992, 2) (2D shapes)
└── Tables
└── 'table': AnnData (4992, 32285)
with coordinate systems:
▸ 'GSM8989875_C_S3', with elements:
GSM8989875_C_S3_hires_image (Images), GSM8989875_C_S3_lowres_image (Images), GSM8989875_C_S3 (Shapes)
▸ 'GSM8989875_C_S3_downscaled_hires', with elements:
GSM8989875_C_S3_hires_image (Images), GSM8989875_C_S3 (Shapes)
▸ 'GSM8989875_C_S3_downscaled_lowres', with elements:
GSM8989875_C_S3_lowres_image (Images), GSM8989875_C_S3 (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("KgueSiH2oL9iZlQs0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("KgueSiH2oL9iZlQs") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download KgueSiH2oL9iZlQs0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/KgueSiH2oL9iZlQs
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid KgueSiH2oL9iZlQsLicense: NCBI GEO policy
Part of collection
Spatial transcriptomics and scRNA-sequencing on gastrocnemius muscle form B6-mdx and D2-mdx mice→ 4 datasets · comparison
Metadata
- Technology
- Visium
- Organism
- mouse
- Tissue
- gastrocnemius
- Condition
- Duchenne muscular dystrophy
- Modality
- RNA
- Observations (spots)
- 4,992
- Tier
- bronze
- Chemistry
- Visium v1
- Resolution
- 2,000 × 1,684 px
- mpp
- 4.347 µm/px
- Size
- 6.8 MB
- Sample ID
- GSM8989875
- License
- NCBI GEO policy
- Published
- Jul 1, 2026
Cite this dataset
doi.org/10.1186/s13395-026-00429-2 ↗ BibTeX
@article{Guillemaud_2026,
title = {Stimulation of EGFR signaling in fibro-adipogenic precursors decreases adipogenesis in Duchenne muscular dystrophy},
volume = {16},
ISSN = {2044-5040},
url = {http://dx.doi.org/10.1186/s13395-026-00429-2},
DOI = {10.1186/s13395-026-00429-2},
number = {1},
journal = {Skeletal Muscle},
publisher = {Springer Science and Business Media LLC},
author = {Guillemaud, Jules and Panci, Georgiana and Fessard, Aurélie and Delivry, Léa and Jarassier, William and Mounier, Rémi and Gondin, Julien and Gobert, Stéphanie and Chazaud, Bénédicte},
year = {2026},
month = May
}Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB