Visium
Human cerebral cortex
GSM9065768
bronze Interactive viewer H&E isolated focal cortical dysplasia type II Provisional
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM9065768_G_hires_image': DataArray[cyx] (3, 1360, 2000)
│ └── 'GSM9065768_G_lowres_image': DataArray[cyx] (3, 408, 600)
├── Shapes
│ └── 'GSM9065768_G': GeoDataFrame shape: (4992, 2) (2D shapes)
└── Tables
└── 'table': AnnData (4992, 37082)
with coordinate systems:
▸ 'GSM9065768_G', with elements:
GSM9065768_G_hires_image (Images), GSM9065768_G_lowres_image (Images), GSM9065768_G (Shapes)
▸ 'GSM9065768_G_downscaled_hires', with elements:
GSM9065768_G_hires_image (Images), GSM9065768_G (Shapes)
▸ 'GSM9065768_G_downscaled_lowres', with elements:
GSM9065768_G_lowres_image (Images), GSM9065768_G (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("mz4XKnm6BBDUfEjy0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("mz4XKnm6BBDUfEjy") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download mz4XKnm6BBDUfEjy0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/mz4XKnm6BBDUfEjy
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid mz4XKnm6BBDUfEjyLicense: NCBI GEO policy
Part of collection
Dysmorphic neurons express markers of inhibitory glycinergic signaling in focal cortical dysplasia→ 4 datasets · other
Metadata
- Technology
- Visium
- Organism
- human
- Tissue
- cerebral cortex
- Condition
- isolated focal cortical dysplasia type II
- Modality
- RNA
- Observations (spots)
- 4,992
- Tier
- bronze
- Chemistry
- Visium v1
- Magnification
- other
- Resolution
- 2,000 × 1,360 px
- mpp
- 10.912 µm/px
- Size
- 105 MB
- Sample ID
- GSM9065768
- License
- NCBI GEO policy
- Published
- Aug 19, 2025
Cite this dataset
doi.org/10.1111/bpa.70043 ↗ BibTeX
@article{Paliwal_2025,
title = {Dysmorphic neurons express markers of inhibitory glycinergic signaling in focal cortical dysplasia
<scp>IIb</scp>},
volume = {36},
ISSN = {1750-3639},
url = {http://dx.doi.org/10.1111/bpa.70043},
DOI = {10.1111/bpa.70043},
number = {2},
journal = {Brain Pathology},
publisher = {Wiley},
author = {Paliwal, Ameesha and Faust, Kevin and Borhani, Okty Abbasi and Liu, Mugeng and Omoto, Lauren and Kamski‐Hennekam, Evelyn Rose and Zadeh, Parsa Babaei and Sajid, Rifat Shahriar and Diamandis, Phedias},
year = {2025},
month = Sept
}Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB