Visium
Human brain
GSM9544606
bronze Interactive viewer H&E lung carcinoma Provisional
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM9544606_LBM_RIH_2_HPT_hires_image': DataArray[cyx] (3, 1970, 2000)
│ └── 'GSM9544606_LBM_RIH_2_HPT_lowres_image': DataArray[cyx] (3, 591, 600)
├── Shapes
│ └── 'GSM9544606_LBM_RIH_2_HPT': GeoDataFrame shape: (809, 2) (2D shapes)
└── Tables
└── 'table': AnnData (809, 18085)
with coordinate systems:
▸ 'GSM9544606_LBM_RIH_2_HPT', with elements:
GSM9544606_LBM_RIH_2_HPT_hires_image (Images), GSM9544606_LBM_RIH_2_HPT_lowres_image (Images), GSM9544606_LBM_RIH_2_HPT (Shapes)
▸ 'GSM9544606_LBM_RIH_2_HPT_downscaled_hires', with elements:
GSM9544606_LBM_RIH_2_HPT_hires_image (Images), GSM9544606_LBM_RIH_2_HPT (Shapes)
▸ 'GSM9544606_LBM_RIH_2_HPT_downscaled_lowres', with elements:
GSM9544606_LBM_RIH_2_HPT_lowres_image (Images), GSM9544606_LBM_RIH_2_HPT (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("prALFkQ1xOxDZRMR0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("prALFkQ1xOxDZRMR") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download prALFkQ1xOxDZRMR0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/prALFkQ1xOxDZRMR
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid prALFkQ1xOxDZRMRLicense: NCBI GEO policy
Part of collection
Single cell and spatial sequencing analysis of cancer associated fibroblasts in the brain metastasis tumor microenvironment→ 4 datasets · other
Metadata
- Technology
- Visium
- Organism
- human
- Tissue
- brain
- Condition
- lung carcinoma
- Modality
- RNA
- Observations (spots)
- 809
- Tier
- bronze
- Chemistry
- Visium v1
- Resolution
- 2,000 × 1,970 px
- mpp
- 3.346 µm/px
- Size
- 9.8 MB
- Sample ID
- GSM9544606
- License
- NCBI GEO policy
- Published
- Mar 5, 2026
Cite this dataset
doi.org/10.1038/s42003-026-09915-1 ↗ BibTeX
@article{geo:GSM9544606,
doi = {10.1038/s42003-026-09915-1},
title = {GSM9544606},
year = {2026}
}Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB