Visium
Human anterior cingulate cortex
GSM8976797
bronze Interactive viewer H&E Provisional
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM8976797_V12N28-331_B1_hires_image': DataArray[cyx] (3, 2000, 1590)
│ └── 'GSM8976797_V12N28-331_B1_lowres_image': DataArray[cyx] (3, 600, 477)
├── Shapes
│ └── 'GSM8976797_V12N28-331_B1': GeoDataFrame shape: (4992, 2) (2D shapes)
└── Tables
└── 'table': AnnData (4992, 36601)
with coordinate systems:
▸ 'GSM8976797_V12N28-331_B1', with elements:
GSM8976797_V12N28-331_B1_hires_image (Images), GSM8976797_V12N28-331_B1_lowres_image (Images), GSM8976797_V12N28-331_B1 (Shapes)
▸ 'GSM8976797_V12N28-331_B1_downscaled_hires', with elements:
GSM8976797_V12N28-331_B1_hires_image (Images), GSM8976797_V12N28-331_B1 (Shapes)
▸ 'GSM8976797_V12N28-331_B1_downscaled_lowres', with elements:
GSM8976797_V12N28-331_B1_lowres_image (Images), GSM8976797_V12N28-331_B1 (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("Az6S2wqbpjHz5oyK0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("Az6S2wqbpjHz5oyK") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download Az6S2wqbpjHz5oyK0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/Az6S2wqbpjHz5oyK
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid Az6S2wqbpjHz5oyKLicense: NCBI GEO policy
Part of collection
Spatio-molecular gene expression reflects dorsal anterior cingulate cortex structure and function in the human brain [spatial transcriptomics]→ 21 datasets · replicates
Metadata
- Technology
- Visium
- Organism
- human
- Tissue
- anterior cingulate cortex
- Modality
- RNA
- Observations (spots)
- 4,992
- Tier
- bronze
- Chemistry
- Visium v1
- Magnification
- other
- Resolution
- 1,590 × 2,000 px
- mpp
- 5.197 µm/px
- Size
- 32.5 MB
- Sample ID
- GSM8976797
- License
- NCBI GEO policy
- Published
- Sep 2, 2025
Cite this dataset
doi.org/10.1016/j.celrep.2026.117500 ↗ BibTeX
@article{Shah_2026,
title = {Spatio-molecular gene expression reflects dorsal anterior cingulate cortex structure and function in the human brain},
volume = {45},
ISSN = {2211-1247},
url = {http://dx.doi.org/10.1016/j.celrep.2026.117500},
DOI = {10.1016/j.celrep.2026.117500},
number = {6},
journal = {Cell Reports},
publisher = {Elsevier BV},
author = {Shah, Kinnary and Totty, Michael S. and Bach, Svitlana V. and Valentine, Madeline R. and Chandra, Atharv and AlGrain, Haya A. and Divecha, Heena R. and Miller, Ryan A. and Siewe, Felix Rene M. and Kwon, Sang Ho and Del Rosario Alvia, Ishbel and Ramnauth, Anthony D. and Tippani, Madhavi and Tyagi, Sanjana and Kleinman, Joel E. and Collado-Torres, Leonardo and Han, Shizhong and Hyde, Thomas M. and Page, Stephanie C. and Maynard, Kristen R. and Hicks, Stephanie C. and Martinowich, Keri},
year = {2026},
month = June,
pages = {117500}
}Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB