Visium
Human amygdala
GSM9937045
silver Interactive viewer H&E No linked publication
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM9937045_Br6660-V13Y24-369_D1_full_image': DataTree[cyx] (3, 26179, 26146), (3, 13089, 13073), (3, 6544, 6536), (3, 3272, 3268), (3, 1636, 1634)
│ ├── 'GSM9937045_Br6660-V13Y24-369_D1_hires_image': DataArray[cyx] (3, 2000, 1998)
│ └── 'GSM9937045_Br6660-V13Y24-369_D1_lowres_image': DataArray[cyx] (3, 600, 599)
├── Shapes
│ └── 'GSM9937045_Br6660-V13Y24-369_D1': GeoDataFrame shape: (4992, 2) (2D shapes)
└── Tables
└── 'table': AnnData (4992, 36601)
with coordinate systems:
▸ 'GSM9937045_Br6660-V13Y24-369_D1', with elements:
GSM9937045_Br6660-V13Y24-369_D1_full_image (Images), GSM9937045_Br6660-V13Y24-369_D1_hires_image (Images), GSM9937045_Br6660-V13Y24-369_D1_lowres_image (Images), GSM9937045_Br6660-V13Y24-369_D1 (Shapes)
▸ 'GSM9937045_Br6660-V13Y24-369_D1_downscaled_hires', with elements:
GSM9937045_Br6660-V13Y24-369_D1_hires_image (Images), GSM9937045_Br6660-V13Y24-369_D1 (Shapes)
▸ 'GSM9937045_Br6660-V13Y24-369_D1_downscaled_lowres', with elements:
GSM9937045_Br6660-V13Y24-369_D1_lowres_image (Images), GSM9937045_Br6660-V13Y24-369_D1 (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("Supj75UMHFKQtKz80000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("Supj75UMHFKQtKz8") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download Supj75UMHFKQtKz80000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/Supj75UMHFKQtKz8
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid Supj75UMHFKQtKz8License: NCBI GEO policy
Part of collection
Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium]→ 48 datasets · replicates
Metadata
- Technology
- Visium
- Organism
- human
- Tissue
- amygdala
- Modality
- RNA
- Observations (spots)
- 4,992
- Tier
- silver
- Chemistry
- Visium v1
- Magnification
- 20x
- Resolution
- 26,146 × 26,179 px
- mpp
- 0.305 µm/px
- Size
- 2.1 GB
- Sample ID
- GSM9937045
- License
- NCBI GEO policy
- Published
- Aug 24, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB