Visium HD
Mouse ovary
GSM9229329
silver Interactive viewer No linked publication
print(sdata)
SpatialData object
├── Shapes
│ ├── 'GSM9229329_E18_5_square_008um': GeoDataFrame shape: (138362, 1) (2D shapes)
│ └── 'GSM9229329_E18_5_square_008um_for_vitessce': GeoDataFrame shape: (138362, 2) (2D shapes)
└── Tables
└── 'square_008um': AnnData (138362, 19059)
with coordinate systems:
▸ 'GSM9229329_E18_5', with elements:
GSM9229329_E18_5_square_008um (Shapes), GSM9229329_E18_5_square_008um_for_vitessce (Shapes)
▸ 'GSM9229329_E18_5_downscaled_hires', with elements:
GSM9229329_E18_5_square_008um (Shapes), GSM9229329_E18_5_square_008um_for_vitessce (Shapes)
▸ 'GSM9229329_E18_5_downscaled_lowres', with elements:
GSM9229329_E18_5_square_008um (Shapes), GSM9229329_E18_5_square_008um_for_vitessce (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("plgP263zT6248diN0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("plgP263zT6248diN") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download plgP263zT6248diN0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/plgP263zT6248diN
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid plgP263zT6248diNLicense: NCBI GEO policy
Part of collection
Single-cell-scale spatial transcriptome of the developing and adult mouse ovary→ 8 datasets · other
Metadata
- Technology
- Visium HD
- Organism
- mouse
- Tissue
- ovary
- Modality
- RNA
- Observations (bins)
- 138,362
- Tier
- silver
- Size
- 690 MB
- Sample ID
- GSM9229329
- License
- NCBI GEO policy
- Published
- Oct 14, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB