Visium HD
Human dorsolateral prefrontal cortex
GSM9824679
silver Interactive viewer H&E No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'GSM9824679_Hct15HABA021_A5_full_image': DataTree[cyx] (3, 10395, 17858), (3, 5197, 8929), (3, 2598, 4464), (3, 1299, 2232), (3, 649, 1116)
├── Shapes
│ ├── 'GSM9824679_Hct15HABA021_A5_square_016um': GeoDataFrame shape: (133914, 1) (2D shapes)
│ └── 'GSM9824679_Hct15HABA021_A5_square_016um_for_vitessce': GeoDataFrame shape: (133914, 2) (2D shapes)
└── Tables
└── 'square_016um': AnnData (133914, 18085)
with coordinate systems:
▸ 'GSM9824679_Hct15HABA021_A5', with elements:
GSM9824679_Hct15HABA021_A5_full_image (Images), GSM9824679_Hct15HABA021_A5_square_016um (Shapes), GSM9824679_Hct15HABA021_A5_square_016um_for_vitessce (Shapes)
▸ 'GSM9824679_Hct15HABA021_A5_downscaled_hires', with elements:
GSM9824679_Hct15HABA021_A5_square_016um (Shapes), GSM9824679_Hct15HABA021_A5_square_016um_for_vitessce (Shapes)
▸ 'GSM9824679_Hct15HABA021_A5_downscaled_lowres', with elements:
GSM9824679_Hct15HABA021_A5_square_016um (Shapes), GSM9824679_Hct15HABA021_A5_square_016um_for_vitessce (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("iwpBSPKY3fbkdX3v0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("iwpBSPKY3fbkdX3v") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download iwpBSPKY3fbkdX3v0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/iwpBSPKY3fbkdX3v
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid iwpBSPKY3fbkdX3vLicense: NCBI GEO policy
Metadata
- Technology
- Visium HD
- Vendor
- 10x Genomics
- Organism
- human
- Tissue
- dorsolateral prefrontal cortex
- Modality
- RNA
- Observations (bins)
- 133,914
- Tier
- silver
- Resolution
- 17,858 × 10,395 px
- mpp
- 0.764 µm/px
- Size
- 1.1 GB
- Sample ID
- GSM9824679
- License
- NCBI GEO policy
- Published
- Oct 7, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB