Stereo-seq
Mouse blood vessel
GSE328244:Y02349J314
bronze Under review Interactive viewer Provisional
print(sdata)
SpatialData object
├── Shapes
│ ├── 'GSE328244_Y02349J314_square_025um': GeoDataFrame shape: (3537, 1) (2D shapes)
│ └── 'GSE328244_Y02349J314_square_025um_for_vitessce': GeoDataFrame shape: (3537, 2) (2D shapes)
└── Tables
└── 'table': AnnData (3537, 26731)
with coordinate systems:
▸ 'global', with elements:
GSE328244_Y02349J314_square_025um (Shapes), GSE328244_Y02349J314_square_025um_for_vitessce (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("LpFKnW5vluEfwGhI0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("LpFKnW5vluEfwGhI") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download LpFKnW5vluEfwGhI0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/LpFKnW5vluEfwGhI
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid LpFKnW5vluEfwGhILicense: NCBI GEO policy
Metadata
- Technology
- Stereo-seq
- Organism
- mouse
- Tissue
- blood vessel
- Modality
- RNA
- Observations (cells)
- 3,537
- Tier
- bronze
- Size
- 37.1 MB
- Sample ID
- GSE328244:Y02349J314
- License
- NCBI GEO policy
- Published
- Sep 10, 2026
- Review
- one chip (Y02349J314) holds 4 GSM libraries with condition NC, AG (control and allograft); per-sample split needed for per-sample disease
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB