spatial-CITE-seq
Human liver
GSM9775962
bronze Interactive viewer hepatocellular carcinoma ✓ Verified publication
print(sdata)
SpatialData object
├── Shapes
│ ├── 'spots': GeoDataFrame shape: (2480, 1) (2D shapes)
│ └── 'spots_for_vitessce': GeoDataFrame shape: (2480, 2) (2D shapes)
└── Tables
└── 'table': AnnData (2480, 29714)
with coordinate systems:
▸ 'global', with elements:
spots (Shapes), spots_for_vitessce (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("TcoIVtQv2QGATtmN0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("TcoIVtQv2QGATtmN") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download TcoIVtQv2QGATtmN0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/TcoIVtQv2QGATtmN
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid TcoIVtQv2QGATtmNLicense: NCBI GEO policy
Metadata
- Technology
- spatial-CITE-seq
- Organism
- human
- Tissue
- liver
- Condition
- hepatocellular carcinoma
- Modality
- RNA · protein
- Observations (pixels)
- 2,480
- Tier
- bronze
- Size
- 40.3 MB
- Sample ID
- GSM9775962
- License
- NCBI GEO policy
- Published
- Jun 4, 2026
Cite this dataset
doi.org/10.64898/2026.07.08.737217 ↗ BibTeX
@article{geo:GSE333851,
doi = {10.64898/2026.07.08.737217},
title = {GSM9775946},
year = {2026}
}Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB