PhenoCycler
Mouse bone marrow
23672666:QuantCell_bone_marrow_PhenoCycler
bronze Interactive viewer ✓ Verified publication
print(sdata)
SpatialData object
├── Images
│ └── 'QuantCell_bone_marrow_PhenoCycler_image': DataTree[cyx] (45, 11147, 30264), (45, 5573, 15132), (45, 2786, 7566), (45, 1393, 3783), (45, 696, 1891)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (158481, 1) (2D shapes)
│ └── 'cell_boundaries_for_vitessce': GeoDataFrame shape: (158481, 2) (2D shapes)
└── Tables
└── 'table': AnnData (158481, 45)
with coordinate systems:
▸ 'global', with elements:
QuantCell_bone_marrow_PhenoCycler_image (Images), cell_boundaries (Shapes), cell_boundaries_for_vitessce (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("i9VhUD5cpfeo3bCX0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("i9VhUD5cpfeo3bCX") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download i9VhUD5cpfeo3bCX0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/i9VhUD5cpfeo3bCX
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid i9VhUD5cpfeo3bCXLicense: CC BY 4.0
Metadata
- Technology
- PhenoCycler
- Organism
- mouse
- Tissue
- bone marrow
- Modality
- protein
- Observations (cells)
- 158,481
- Tier
- bronze
- Staining
- IF
- Size
- 1.9 GB
- Sample ID
- 23672666:QuantCell_bone_marrow_PhenoCycler
- License
- CC BY 4.0
- Published
- Oct 26, 2026
Cite this dataset
doi.org/10.64898/2026.02.15.706033 ↗ BibTeX
@article{zenodo:23672666,
doi = {10.64898/2026.02.15.706033},
title = {23672666:QuantCell_bone_marrow_PhenoCycler},
year = {2026}
}Source: doi.org ↗ · License: CC BY 4.0 ↗ · Reprocessed to SpatialData by SpatialData-DB