MIBI-TOF
Human lymph node
S-BIAD2864:sample8_fov8
bronze No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'sample8_fov8_image': DataTree[cyx] (40, 2048, 2048), (40, 1024, 1024), (40, 512, 512), (40, 256, 256), (40, 128, 128)
├── Labels
│ └── 'sample8_fov8_whole_cell_labels': DataTree[yx] (2048, 2048), (1024, 1024), (512, 512), (256, 256), (128, 128)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (11539, 2) (2D shapes)
│ └── 'cell_boundaries_for_vitessce': GeoDataFrame shape: (11539, 2) (2D shapes)
└── Tables
└── 'table': AnnData (11539, 40)
with coordinate systems:
▸ 'global', with elements:
sample8_fov8_image (Images), sample8_fov8_whole_cell_labels (Labels), cell_boundaries (Shapes), cell_boundaries_for_vitessce (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("s2vtoS0RTS2ZDGZd0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("s2vtoS0RTS2ZDGZd") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download s2vtoS0RTS2ZDGZd0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/s2vtoS0RTS2ZDGZd
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid s2vtoS0RTS2ZDGZdLicense: CC0 1.0
Metadata
- Technology
- MIBI-TOF
- Organism
- human
- Tissue
- lymph node
- Modality
- protein
- Observations (cells)
- 11,539
- Tier
- bronze
- Chemistry
- MIBI
- Staining
- Antibodies
- Size
- 516 MB
- Sample ID
- S-BIAD2864:sample8_fov8
- License
- CC0 1.0
- Published
- Feb 3, 2026
Cite this dataset
No linked publication found — please cite the data source: BioImage Archive ↗.
Source: BioImage Archive ↗ · License: CC0 1.0 ↗ · Reprocessed to SpatialData by SpatialData-DB