MERFISH
Mouse hypothalamus
18011834:MERFISH_PBSm01-04_section5
bronze Interactive viewer Provisional
print(sdata)
SpatialData object
├── Shapes
│ └── 'cells': GeoDataFrame shape: (11046, 2) (2D shapes)
└── Tables
└── 'table': AnnData (11046, 939)
with coordinate systems:
▸ 'global', with elements:
cells (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("BEThye1XIkt8m3RL0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("BEThye1XIkt8m3RL") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download BEThye1XIkt8m3RL0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/BEThye1XIkt8m3RL
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid BEThye1XIkt8m3RLLicense: CC BY 4.0
Metadata
- Technology
- MERFISH
- Organism
- mouse
- Tissue
- hypothalamus
- Modality
- RNA
- Observations (cells)
- 11,046
- Tier
- bronze
- Size
- 7.5 MB
- Sample ID
- 18011834:MERFISH_PBSm01-04_section5
- License
- CC BY 4.0
- Published
- Dec 21, 2025
Cite this dataset
doi.org/10.64898/2025.12.06.692770 ↗ BibTeX
@article{zenodo:18011834,
doi = {10.64898/2025.12.06.692770},
title = {18011834:MERFISH_STAGm01-02_section6},
year = {2025}
}Source: zenodo.org ↗ · License: CC BY 4.0 ↗ · Reprocessed to SpatialData by SpatialData-DB