# SpatialData-DB datasets, shard f4

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-spatial-gene-expression-mammary-gland-xeoqk08rssppj4l70000"></a>
## Rat mammary gland

- uid: `xeOQK08RssPPj4L70000`
- Page: /datasets/visium-spatial-gene-expression-mammary-gland-xeoqk08rssppj4l70000/
- Technology: Visium
- Organism: rat
- Tissue: mammary gland
- Modality: RNA
- Observations (spots): 3,636
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE253585
- Publication: https://doi.org/10.1016/j.ccell.2026.03.015
- Collections: [geo-gse253585](/collections/md/8.md#geo-gse253585)
- Load: `Catalog().dataset("xeOQK08RssPPj4L70000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-60wfqudtpo9x5xfs0004"></a>
## Mouse brain

- uid: `60wFqUDTpO9x5XFS0004`
- Page: /datasets/visium-spatial-gene-expression-brain-60wfqudtpo9x5xfs0004/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 5,134
- Licence: CC BY 4.0
- Source: https://www.10xgenomics.com/datasets/preservation-method-comparison-on-visium-cytassist-fixed-frozen-mouse-brain-sagittal-11-mm-capture-area-2-standard
- Load: `Catalog().dataset("60wFqUDTpO9x5XFS0004").to_sdata()`


<a id="visium-spatial-gene-expression-placenta-fhern6yv1ymjqpzv0000"></a>
## Human placenta

- uid: `fheRN6YV1yMJQpzV0000`
- Page: /datasets/visium-spatial-gene-expression-placenta-fhern6yv1ymjqpzv0000/
- Technology: Visium
- Organism: human
- Tissue: placenta
- Modality: RNA
- Observations (spots): 470
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://pubmed.ncbi.nlm.nih.gov/37423216/
- Publication: https://doi.org/10.1016/j.medj.2023.06.003
- Collections: [doi-10-1016-j-medj-2023-06-003](/collections/md/6.md#doi-10-1016-j-medj-2023-06-003)
- Load: `Catalog().dataset("fheRN6YV1yMJQpzV0000").to_sdata()`


<a id="visium-spatial-gene-expression-intestine-rldbpkeuyuvep9yv0000"></a>
## Human intestine

- uid: `RlDBpKEuyUVEP9yV0000`
- Page: /datasets/visium-spatial-gene-expression-intestine-rldbpkeuyuvep9yv0000/
- Technology: Visium
- Organism: human
- Tissue: intestine
- Modality: RNA
- Observations (spots): 1,656
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.biorxiv.org/content/10.1101/2023.01.23.525135v2
- Publication: https://doi.org/10.1101/2023.01.23.525135
- Collections: [doi-10-1101-2023-01-23-525135](/collections/md/f.md#doi-10-1101-2023-01-23-525135)
- Load: `Catalog().dataset("RlDBpKEuyUVEP9yV0000").to_sdata()`


<a id="visium-spatial-gene-expression-palatine-tonsil-mehb6uwnlqr99pfd0000"></a>
## Human palatine tonsil

- uid: `MeHB6UWnlQR99PFD0000`
- Page: /datasets/visium-spatial-gene-expression-palatine-tonsil-mehb6uwnlqr99pfd0000/
- Technology: Visium
- Organism: human
- Tissue: palatine tonsil
- Modality: RNA
- Observations (spots): 4,923
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE276542
- Publication: https://doi.org/10.1080/2162402X.2026.2660418
- Collections: [geo-gse276542](/collections/md/2.md#geo-gse276542)
- Load: `Catalog().dataset("MeHB6UWnlQR99PFD0000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-fcvtdiywulxzgbuz0000"></a>
## Human basal ganglion

- uid: `FcVTDIYwuLXZgbuz0000`
- Page: /datasets/vizgen-merscope-basal-ganglion-fcvtdiywulxzgbuz0000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 31,978
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Collections: [abc-hmba-merscope-h22-30-001-bg](/collections/md/b.md#abc-hmba-merscope-h22-30-001-bg)
- Load: `Catalog().dataset("FcVTDIYwuLXZgbuz0000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-lfyu1istji8hq7qr0000"></a>
## Human basal ganglion

- uid: `lFyu1iSTji8HQ7QR0000`
- Page: /datasets/vizgen-merscope-basal-ganglion-lfyu1istji8hq7qr0000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 99,191
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Load: `Catalog().dataset("lFyu1iSTji8HQ7QR0000").to_sdata()`


<a id="visium-spatial-gene-expression-lymphoid-tissue-byfgwxghxwpfhx1x0000"></a>
## Human lymphoid tissue

- uid: `BYfgwxGhxWpFHx1X0000`
- Page: /datasets/visium-spatial-gene-expression-lymphoid-tissue-byfgwxghxwpfhx1x0000/
- Technology: Visium
- Organism: human
- Tissue: lymphoid tissue
- Condition: non-Hodgkin lymphoma
- Modality: RNA
- Observations (spots): 9,020
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE274051
- Publication: https://doi.org/10.1101/2025.10.15.682084
- Collections: [geo-gse274051](/collections/md/9.md#geo-gse274051)
- Load: `Catalog().dataset("BYfgwxGhxWpFHx1X0000").to_sdata()`


<a id="visium-spatial-gene-expression-breast-7sdzopggulp07stq0000"></a>
## Human breast

- uid: `7SDzOpGguLp07sTq0000`
- Page: /datasets/visium-spatial-gene-expression-breast-7sdzopggulp07stq0000/
- Technology: Visium
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: RNA
- Observations (spots): 1,596
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE213688
- Publication: https://doi.org/10.1016/j.labinv.2023.100258
- Collections: [geo-gse213688](/collections/md/5.md#geo-gse213688)
- Load: `Catalog().dataset("7SDzOpGguLp07sTq0000").to_sdata()`


<a id="visium-spatial-gene-expression-pancreas-pb3c80s3cyb70vtq0000"></a>
## Human pancreas

- uid: `Pb3c80s3CyB70Vtq0000`
- Page: /datasets/visium-spatial-gene-expression-pancreas-pb3c80s3cyb70vtq0000/
- Technology: Visium
- Organism: human
- Tissue: pancreas
- Condition: pancreatic ductal adenocarcinoma
- Modality: RNA
- Observations (spots): 3,894
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE282302
- Publication: https://doi.org/10.1016/j.celrep.2025.116827
- Collections: [geo-gse282302](/collections/md/d.md#geo-gse282302)
- Load: `Catalog().dataset("Pb3c80s3CyB70Vtq0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-xmemg7qv7hqgdisn0000"></a>
## Mouse liver

- uid: `xmemg7qV7HQgdISN0000`
- Page: /datasets/visium-spatial-gene-expression-liver-xmemg7qv7hqgdisn0000/
- Technology: Visium
- Organism: mouse
- Tissue: liver
- Condition: hepatocellular carcinoma
- Modality: RNA
- Observations (spots): 2,895
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE302815
- Publication: https://doi.org/10.1073/pnas.2521923123
- Collections: [geo-gse302815](/collections/md/8.md#geo-gse302815)
- Load: `Catalog().dataset("xmemg7qV7HQgdISN0000").to_sdata()`


<a id="visium-spatial-gene-expression-kidney-xbe3kpolb7oafnhx0000"></a>
## Mouse kidney

- uid: `XbE3kPoLb7oafNHX0000`
- Page: /datasets/visium-spatial-gene-expression-kidney-xbe3kpolb7oafnhx0000/
- Technology: Visium
- Organism: mouse
- Tissue: kidney
- Condition: diabetic kidney disease
- Modality: RNA
- Observations (spots): 1,306
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE324612
- Publication: https://doi.org/10.1681/ASN.0000001248
- Collections: [geo-gse324612](/collections/md/f.md#geo-gse324612)
- Load: `Catalog().dataset("XbE3kPoLb7oafNHX0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-4lmkb77veygrfvni0000"></a>
## Mouse brain

- uid: `4lmKB77VeyGrFvNi0000`
- Page: /datasets/visium-spatial-gene-expression-brain-4lmkb77veygrfvni0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 2,854
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE283283
- Collections: [geo-gse283283](/collections/md/4.md#geo-gse283283)
- Load: `Catalog().dataset("4lmKB77VeyGrFvNi0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-ednx8wnrhxvbk2uv0000"></a>
## Human brain

- uid: `EDnX8Wnrhxvbk2uv0000`
- Page: /datasets/visium-spatial-gene-expression-brain-ednx8wnrhxvbk2uv0000/
- Technology: Visium
- Organism: human
- Tissue: brain
- Condition: metastatic malignant neoplasm
- Modality: RNA
- Observations (spots): 4,607
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE325196
- Collections: [geo-gse325196](/collections/md/2.md#geo-gse325196)
- Load: `Catalog().dataset("EDnX8Wnrhxvbk2uv0000").to_sdata()`


<a id="visium-spatial-gene-expression-ectocervix-yhuzivehiuyhbjlj0000"></a>
## Human ectocervix

- uid: `YHuziveHiuYHbjlj0000`
- Page: /datasets/visium-spatial-gene-expression-ectocervix-yhuzivehiuyhbjlj0000/
- Technology: Visium
- Organism: human
- Tissue: ectocervix
- Modality: RNA
- Observations (spots): 1,130
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9044535
- Collections: [geo-gse299708](/collections/md/a.md#geo-gse299708)
- Load: `Catalog().dataset("YHuziveHiuYHbjlj0000").to_sdata()`


<a id="visium-spatial-gene-expression-colon-afvnxtewymmuusle0000"></a>
## Human colon

- uid: `afvnxtewYmMuUsLE0000`
- Page: /datasets/visium-spatial-gene-expression-colon-afvnxtewymmuusle0000/
- Technology: Visium
- Organism: human
- Tissue: colon
- Modality: RNA
- Observations (spots): 3,689
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE334323
- Collections: [geo-gse334323](/collections/md/a.md#geo-gse334323)
- Load: `Catalog().dataset("afvnxtewYmMuUsLE0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-louceykvpmtuwpte0000"></a>
## Mouse liver

- uid: `LOuCeYKvpmTuWpte0000`
- Page: /datasets/visium-spatial-gene-expression-liver-louceykvpmtuwpte0000/
- Technology: Visium
- Organism: mouse
- Tissue: liver
- Condition: hepatoblastoma
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7016922
- Collections: [geo-gse195575](/collections/md/d.md#geo-gse195575)
- Load: `Catalog().dataset("LOuCeYKvpmTuWpte0000").to_sdata()`


<a id="10x-xenium-lung-zu8xeuiiioh0upcy0001"></a>
## Human lung

- uid: `zU8xEuiIiOh0uPCY0001`
- Page: /datasets/10x-xenium-lung-zu8xeuiiioh0upcy0001/
- Technology: 10x Xenium
- Organism: human
- Tissue: lung
- Condition: lung cancer
- Modality: RNA
- Observations (cells): 278,659
- Licence: CC BY 4.0
- Source: https://www.10xgenomics.com/datasets/xenium-human-lung-cancer-post-xenium-technote
- Collections: [10x-xenium-human-lung-cancer-post-xenium-technote](/collections/md/d.md#10x-xenium-human-lung-cancer-post-xenium-technote)
- Load: `Catalog().dataset("zU8xEuiIiOh0uPCY0001").to_sdata()`


<a id="visium-spatial-gene-expression-small-intestine-7nanaxeehj6whicu0000"></a>
## Mouse small intestine

- uid: `7nANAXEEhj6WHiCU0000`
- Page: /datasets/visium-spatial-gene-expression-small-intestine-7nanaxeehj6whicu0000/
- Technology: Visium
- Organism: mouse
- Tissue: small intestine
- Modality: RNA
- Observations (spots): 3,894
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE277106
- Publication: https://doi.org/10.1016/j.jcmgh.2026.101740
- Collections: [geo-gse277106](/collections/md/3.md#geo-gse277106)
- Load: `Catalog().dataset("7nANAXEEhj6WHiCU0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-tfhaeh73dyxcpokd0000"></a>
## Human brain

- uid: `tFHAeh73DYxCPOkD0000`
- Page: /datasets/visium-spatial-gene-expression-brain-tfhaeh73dyxcpokd0000/
- Technology: Visium
- Organism: human
- Tissue: brain
- Condition: metastatic malignant neoplasm
- Modality: RNA
- Observations (spots): 3,876
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE325196
- Collections: [geo-gse325196](/collections/md/2.md#geo-gse325196)
- Load: `Catalog().dataset("tFHAeh73DYxCPOkD0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-liver-yb0ol2ge5laqunty0000"></a>
## Mouse liver

- uid: `YB0oL2GE5laquNTy0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-liver-yb0ol2ge5laqunty0000/
- Technology: MALDI mass spectrometry imaging
- Organism: mouse
- Tissue: liver
- Modality: Metabolomics
- Observations: 10,000
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2022-04-14_10h46m03s
- Publication: https://doi.org/10.1038/s42255-024-01118-4
- Load: `Catalog().dataset("YB0oL2GE5laquNTy0000").to_sdata()`


<a id="mibi-tof-breast-ifjbnlmcgryc3av50000"></a>
## Human breast

- uid: `IFjBNLmCgryC3av50000`
- Page: /datasets/mibi-tof-breast-ifjbnlmcgryc3av50000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 6,265
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("IFjBNLmCgryC3av50000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-seh6wa2zbiwka5iq0000"></a>
## Human kidney

- uid: `sEh6WA2ZbIwKa5iQ0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-seh6wa2zbiwka5iq0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 7,178
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2023-06-15_19h37m38s
- Load: `Catalog().dataset("sEh6WA2ZbIwKa5iQ0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-liver-gvlqqdlp8t2njgnl0000"></a>
## Mouse liver

- uid: `gVLqQdLP8t2NJGNL0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-liver-gvlqqdlp8t2njgnl0000/
- Technology: MALDI mass spectrometry imaging
- Organism: mouse
- Tissue: liver
- Modality: Metabolomics
- Observations: 10,000
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2022-04-11_10h31m36s
- Publication: https://doi.org/10.1038/s42255-024-01118-4
- Load: `Catalog().dataset("gVLqQdLP8t2NJGNL0000").to_sdata()`


<a id="mibi-tof-brain-ewv4sgjkhovxm5ye0000"></a>
## Human brain

- uid: `EWv4sGJkhOVXM5yE0000`
- Page: /datasets/mibi-tof-brain-ewv4sgjkhovxm5ye0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: brain
- Condition: glioma
- Modality: protein
- Observations: 3
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1579
- Collections: [bia-s-biad1579](/collections/md/2.md#bia-s-biad1579)
- Load: `Catalog().dataset("EWv4sGJkhOVXM5yE0000").to_sdata()`


<a id="vizgen-merscope-brain-tnopqcfh3kntj9pr0000"></a>
## Mouse brain

- uid: `tNOpqCFh3kNTJ9pR0000`
- Page: /datasets/vizgen-merscope-brain-tnopqcfh3kntj9pr0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Condition: Alzheimer disease
- Modality: RNA
- Observations (cells): 131,251
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE275026
- Publication: https://doi.org/10.1038/s41586-025-09662-z
- Collections: [geo-gse275026](/collections/md/f.md#geo-gse275026)
- Load: `Catalog().dataset("tNOpqCFh3kNTJ9pR0000").to_sdata()`


<a id="mibi-tof-breast-wn5qjm8gkjtcvnfo0000"></a>
## Human breast

- uid: `Wn5Qjm8gKJTCVnfo0000`
- Page: /datasets/mibi-tof-breast-wn5qjm8gkjtcvnfo0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 1,213
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("Wn5Qjm8gKJTCVnfo0000").to_sdata()`


<a id="vizgen-merscope-brain-7i5omfjj2ulteu840000"></a>
## Mouse brain

- uid: `7I5oMFJJ2ultEU840000`
- Page: /datasets/vizgen-merscope-brain-7i5omfjj2ulteu840000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 9,589
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE329718
- Load: `Catalog().dataset("7I5oMFJJ2ultEU840000").to_sdata()`


<a id="10x-xenium-lung-t4umlhjzm2jtnpdx0000"></a>
## Human lung

- uid: `t4uMlHjzM2jTNPDx0000`
- Page: /datasets/10x-xenium-lung-t4umlhjzm2jtnpdx0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: lung
- Condition: chronic obstructive pulmonary disease
- Modality: RNA
- Observations (cells): 184,435
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE310162
- Load: `Catalog().dataset("t4uMlHjzM2jTNPDx0000").to_sdata()`


<a id="10x-xenium-dorsolateral-prefrontal-cortex-nedct8eunwqgdpfv0000"></a>
## Human dorsolateral prefrontal cortex

- uid: `NeDcT8eUNwQgdpFV0000`
- Page: /datasets/10x-xenium-dorsolateral-prefrontal-cortex-nedct8eunwqgdpfv0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: dorsolateral prefrontal cortex
- Modality: RNA
- Observations (cells): 45,793
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE307404
- Load: `Catalog().dataset("NeDcT8eUNwQgdpFV0000").to_sdata()`


<a id="merfish-brain-8l1sjql12roulubd0000"></a>
## Mouse brain

- uid: `8L1SJQL12ROUlUbd0000`
- Page: /datasets/merfish-brain-8l1sjql12roulubd0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 9,962
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-1.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-1](/collections/md/5.md#abc-zhuang-abca-1)
- Load: `Catalog().dataset("8L1SJQL12ROUlUbd0000").to_sdata()`