# SpatialData-DB datasets, shard f3

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-spatial-gene-expression-brain-kcskgfra23ln5xpw0000"></a>
## Mouse brain

- uid: `KcSKgfra23lN5Xpw0000`
- Page: /datasets/visium-spatial-gene-expression-brain-kcskgfra23ln5xpw0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 2,797
- Licence: CC BY 4.0
- Source: https://www.10xgenomics.com/datasets/adult-mouse-brain-coronal-section-visium-ff-1-standard
- Load: `Catalog().dataset("KcSKgfra23lN5Xpw0000").to_sdata()`


<a id="visium-spatial-gene-expression-colon-yeiwgebq42lsc8jo0000"></a>
## Mouse colon

- uid: `yEIWgEbq42Lsc8jO0000`
- Page: /datasets/visium-spatial-gene-expression-colon-yeiwgebq42lsc8jo0000/
- Technology: Visium
- Organism: mouse
- Tissue: colon
- Condition: colitis
- Modality: RNA
- Observations (spots): 6,531
- Licence: CC BY 4.0
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE334067
- Publication: https://doi.org/10.1038/s41588-026-02673-0
- Collections: [geo-gse334067](/collections/md/b.md#geo-gse334067)
- Load: `Catalog().dataset("yEIWgEbq42Lsc8jO0000").to_sdata()`


<a id="merfish-brain-ieqpy6ukkigppwam0000"></a>
## Mouse brain

- uid: `IeQPy6ukKIgPpwam0000`
- Page: /datasets/merfish-brain-ieqpy6ukkigppwam0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 9,283
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-1.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-1](/collections/md/5.md#abc-zhuang-abca-1)
- Load: `Catalog().dataset("IeQPy6ukKIgPpwam0000").to_sdata()`


<a id="visium-spatial-gene-expression-lung-uz9wyftj4m7kyrpa0000"></a>
## Mouse lung

- uid: `UZ9wYFtJ4M7KYRpA0000`
- Page: /datasets/visium-spatial-gene-expression-lung-uz9wyftj4m7kyrpa0000/
- Technology: Visium
- Organism: mouse
- Tissue: lung
- Condition: lung adenocarcinoma
- Modality: RNA
- Observations (spots): 2,937
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE202159
- Publication: https://doi.org/10.1038/s41590-023-01504-2
- Collections: [geo-gse215361](/collections/md/1.md#geo-gse215361)
- Load: `Catalog().dataset("UZ9wYFtJ4M7KYRpA0000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-3krvnto7tdhcxg9q0000"></a>
## Human basal ganglion

- uid: `3KRvNtO7tdHcXG9q0000`
- Page: /datasets/vizgen-merscope-basal-ganglion-3krvnto7tdhcxg9q0000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 52,817
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Collections: [abc-hmba-merscope-h22-30-001-bg](/collections/md/b.md#abc-hmba-merscope-h22-30-001-bg)
- Load: `Catalog().dataset("3KRvNtO7tdHcXG9q0000").to_sdata()`


<a id="visium-spatial-gene-expression-entorhinal-cortex-wn7bh3alormftuvq0000"></a>
## Human entorhinal cortex

- uid: `Wn7BH3alormFtuvq0000`
- Page: /datasets/visium-spatial-gene-expression-entorhinal-cortex-wn7bh3alormftuvq0000/
- Technology: Visium
- Organism: human
- Tissue: entorhinal cortex
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE307990
- Publication: https://doi.org/10.1101/2025.11.20.689483
- Collections: [geo-gse307990](/collections/md/6.md#geo-gse307990)
- Load: `Catalog().dataset("Wn7BH3alormFtuvq0000").to_sdata()`


<a id="visium-spatial-gene-expression-skin-of-body-lsogq0mssez8d4n00000"></a>
## Human skin of body

- uid: `lSOGq0mSSEZ8d4N00000`
- Page: /datasets/visium-spatial-gene-expression-skin-of-body-lsogq0mssez8d4n00000/
- Technology: Visium
- Organism: human
- Tissue: skin of body
- Condition: cutaneous melanoma
- Modality: RNA
- Observations (spots): 13,887
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE298774
- Publication: https://doi.org/10.1158/0008-5472.CAN-25-2934
- Collections: [geo-gse298774](/collections/md/2.md#geo-gse298774)
- Load: `Catalog().dataset("lSOGq0mSSEZ8d4N00000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-dixib9tyeoxwoc1z0000"></a>
## Mouse brain

- uid: `DIXiB9tyeOXwoc1z0000`
- Page: /datasets/visium-spatial-gene-expression-brain-dixib9tyeoxwoc1z0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 2,731
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE203424
- Publication: https://doi.org/10.1002/alz.12821
- Collections: [geo-gse203424](/collections/md/7.md#geo-gse203424)
- Load: `Catalog().dataset("DIXiB9tyeOXwoc1z0000").to_sdata()`


<a id="visium-spatial-gene-expression-thymus-zzv5mqjfnl7gagsy0000"></a>
## Human thymus

- uid: `zzV5MQjFNl7Gagsy0000`
- Page: /datasets/visium-spatial-gene-expression-thymus-zzv5mqjfnl7gagsy0000/
- Technology: Visium
- Organism: human
- Tissue: thymus
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE207205
- Publication: https://doi.org/10.3389/fimmu.2022.1092028
- Collections: [geo-gse207205](/collections/md/6.md#geo-gse207205)
- Load: `Catalog().dataset("zzV5MQjFNl7Gagsy0000").to_sdata()`


<a id="visium-spatial-gene-expression-ovary-cz6c0t0cwxzyj9in0000"></a>
## Human ovary

- uid: `Cz6c0t0CWXzYJ9IN0000`
- Page: /datasets/visium-spatial-gene-expression-ovary-cz6c0t0cwxzyj9in0000/
- Technology: Visium
- Organism: human
- Tissue: ovary
- Condition: ovarian serous adenocarcinoma
- Modality: RNA
- Observations (spots): 1,299
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE327312
- Collections: [geo-gse327312](/collections/md/b.md#geo-gse327312)
- Load: `Catalog().dataset("Cz6c0t0CWXzYJ9IN0000").to_sdata()`


<a id="visium-spatial-gene-expression-prostate-gland-yiywx0wuqkfw9ymp0000"></a>
## Mouse prostate gland

- uid: `yIywX0WuqkfW9yMP0000`
- Page: /datasets/visium-spatial-gene-expression-prostate-gland-yiywx0wuqkfw9ymp0000/
- Technology: Visium
- Organism: mouse
- Tissue: prostate gland
- Modality: RNA
- Observations (spots): 2,486
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE284571
- Publication: https://doi.org/10.1101/2024.12.27.630532
- Collections: [geo-gse284571](/collections/md/8.md#geo-gse284571)
- Load: `Catalog().dataset("yIywX0WuqkfW9yMP0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-xcs7tolmajnilvmn0000"></a>
## Mouse brain

- uid: `xCS7TolMAjnilVmn0000`
- Page: /datasets/visium-spatial-gene-expression-brain-xcs7tolmajnilvmn0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 3,403
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE282203
- Publication: https://doi.org/10.64898/2026.01.26.701799
- Collections: [geo-gse282203](/collections/md/3.md#geo-gse282203)
- Load: `Catalog().dataset("xCS7TolMAjnilVmn0000").to_sdata()`


<a id="10x-xenium-tail-p97mwtysxtjz3x1l0000"></a>
## Ambystoma mexicanum tail

- uid: `p97MwTysxtjZ3x1L0000`
- Page: /datasets/10x-xenium-tail-p97mwtysxtjz3x1l0000/
- Technology: 10x Xenium
- Organism: ambystoma mexicanum
- Tissue: tail
- Modality: RNA
- Observations (cells): 10,770
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE313338
- Load: `Catalog().dataset("p97MwTysxtjZ3x1L0000").to_sdata()`


<a id="10x-xenium-skin-of-body-nyv1oz2pmvleaucs0000"></a>
## Human skin of body

- uid: `nyV1oZ2PMvleAUcS0000`
- Page: /datasets/10x-xenium-skin-of-body-nyv1oz2pmvleaucs0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: skin of body
- Modality: RNA
- Observations (cells): 148,741
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE286964
- Load: `Catalog().dataset("nyV1oZ2PMvleAUcS0000").to_sdata()`


<a id="visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-uwiear0alhzsv5bv0000"></a>
## Human dorsolateral prefrontal cortex

- uid: `uwIEAR0alhzsV5bV0000`
- Page: /datasets/visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-uwiear0alhzsv5bv0000/
- Technology: Visium
- Organism: human
- Tissue: dorsolateral prefrontal cortex
- Condition: schizophrenia
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE307403
- Collections: [geo-gse307403](/collections/md/0.md#geo-gse307403)
- Load: `Catalog().dataset("uwIEAR0alhzsV5bV0000").to_sdata()`


<a id="visium-spatial-gene-expression-ectocervix-ucvxntbkrtismlly0000"></a>
## Human ectocervix

- uid: `UcvXntBkrtISmLLY0000`
- Page: /datasets/visium-spatial-gene-expression-ectocervix-ucvxntbkrtismlly0000/
- Technology: Visium
- Organism: human
- Tissue: ectocervix
- Modality: RNA
- Observations (spots): 1,280
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9044530
- Collections: [geo-gse299708](/collections/md/a.md#geo-gse299708)
- Load: `Catalog().dataset("UcvXntBkrtISmLLY0000").to_sdata()`


<a id="visium-spatial-gene-expression-white-matter-qzah7kl3hkxo2ybb0000"></a>
## Human white matter

- uid: `QZAH7Kl3HKxo2yBb0000`
- Page: /datasets/visium-spatial-gene-expression-white-matter-qzah7kl3hkxo2ybb0000/
- Technology: Visium
- Organism: human
- Tissue: white matter
- Condition: multiple sclerosis
- Modality: RNA
- Observations (spots): 3,797
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM6368812
- Collections: [geo-gse208747](/collections/md/d.md#geo-gse208747)
- Load: `Catalog().dataset("QZAH7Kl3HKxo2yBb0000").to_sdata()`


<a id="visium-spatial-gene-expression-colorectum-0ypanyxcdkjmaaqm0000"></a>
## Human colorectum

- uid: `0YPANyxcDKJmaAQM0000`
- Page: /datasets/visium-spatial-gene-expression-colorectum-0ypanyxcdkjmaaqm0000/
- Technology: Visium
- Organism: human
- Tissue: colorectum
- Condition: colorectal cancer
- Modality: RNA
- Observations (spots): 4,676
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7089857
- Collections: [geo-gse226997](/collections/md/a.md#geo-gse226997)
- Load: `Catalog().dataset("0YPANyxcDKJmaAQM0000").to_sdata()`


<a id="visium-spatial-gene-expression-ovary-ox6jeskj2nqonpkp0000"></a>
## Human ovary

- uid: `Ox6jEsKj2nQoNPKP0000`
- Page: /datasets/visium-spatial-gene-expression-ovary-ox6jeskj2nqonpkp0000/
- Technology: Visium
- Organism: human
- Tissue: ovary
- Condition: ovarian serous adenocarcinoma
- Modality: RNA
- Observations (spots): 1,935
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM6506111
- Collections: [geo-gse211956](/collections/md/0.md#geo-gse211956)
- Load: `Catalog().dataset("Ox6jEsKj2nQoNPKP0000").to_sdata()`


<a id="vizgen-merscope-brain-ohnjlwe1nosrk9zj0000"></a>
## Mouse brain

- uid: `oHnjlwe1NOSrk9Zj0000`
- Page: /datasets/vizgen-merscope-brain-ohnjlwe1nosrk9zj0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 12,281
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE329718
- Load: `Catalog().dataset("oHnjlwe1NOSrk9Zj0000").to_sdata()`


<a id="visium-spatial-gene-expression-lymph-node-ed9klk14vkoad4qy0000"></a>
## Human lymph node

- uid: `Ed9KLK14Vkoad4qy0000`
- Page: /datasets/visium-spatial-gene-expression-lymph-node-ed9klk14vkoad4qy0000/
- Technology: Visium
- Organism: human
- Tissue: lymph node
- Modality: RNA
- Observations (spots): 1,001
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8324905
- Collections: [geo-gse269695](/collections/md/b.md#geo-gse269695)
- Load: `Catalog().dataset("Ed9KLK14Vkoad4qy0000").to_sdata()`


<a id="visium-spatial-gene-expression-lung-sburualjgwqlcuse0000"></a>
## Mouse lung

- uid: `sBurUaLjGWQLcuSE0000`
- Page: /datasets/visium-spatial-gene-expression-lung-sburualjgwqlcuse0000/
- Technology: Visium
- Organism: mouse
- Tissue: lung
- Condition: lung cancer
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE295967
- Collections: [geo-gse295967](/collections/md/1.md#geo-gse295967)
- Load: `Catalog().dataset("sBurUaLjGWQLcuSE0000").to_sdata()`


<a id="visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-dfkqso7aekohds5m0000"></a>
## Human dorsolateral prefrontal cortex

- uid: `dfKqso7AekOHDs5M0000`
- Page: /datasets/visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-dfkqso7aekohds5m0000/
- Technology: Visium
- Organism: human
- Tissue: dorsolateral prefrontal cortex
- Condition: schizophrenia
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE307403
- Collections: [geo-gse307403](/collections/md/0.md#geo-gse307403)
- Load: `Catalog().dataset("dfKqso7AekOHDs5M0000").to_sdata()`


<a id="visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-p7lzs8pbrmjfhnbd0000"></a>
## Human dorsolateral prefrontal cortex

- uid: `p7Lzs8pbrMJfhNBd0000`
- Page: /datasets/visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-p7lzs8pbrmjfhnbd0000/
- Technology: Visium
- Organism: human
- Tissue: dorsolateral prefrontal cortex
- Condition: major depressive disorder
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE333974
- Collections: [geo-gse333974](/collections/md/c.md#geo-gse333974)
- Load: `Catalog().dataset("p7Lzs8pbrMJfhNBd0000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-5letr7esclfehi600000"></a>
## Macaque basal ganglion

- uid: `5LeTr7ESCLfEhI600000`
- Page: /datasets/vizgen-merscope-basal-ganglion-5letr7esclfehi600000/
- Technology: Vizgen MERSCOPE
- Organism: macaque
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 34,813
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Collections: [abc-hmba-merscope-qm23-50-001-bg](/collections/md/d.md#abc-hmba-merscope-qm23-50-001-bg)
- Load: `Catalog().dataset("5LeTr7ESCLfEhI600000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-liver-rv1nuhbkxzqjjr7a0000"></a>
## Mouse liver

- uid: `rv1NuhBkXZQJjr7A0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-liver-rv1nuhbkxzqjjr7a0000/
- Technology: MALDI mass spectrometry imaging
- Organism: mouse
- Tissue: liver
- Modality: Metabolomics
- Observations: 10,000
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2022-04-14_11h11m49s
- Publication: https://doi.org/10.1038/s42255-024-01118-4
- Load: `Catalog().dataset("rv1NuhBkXZQJjr7A0000").to_sdata()`


<a id="10x-xenium-tongue-9q4e5jkb8ygq6wls0000"></a>
## Mouse tongue

- uid: `9Q4E5JkB8ygq6wLS0000`
- Page: /datasets/10x-xenium-tongue-9q4e5jkb8ygq6wls0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: tongue
- Condition: head and neck squamous cell carcinoma
- Modality: RNA
- Observations (cells): 54,469
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE302128
- Publication: https://doi.org/10.1038/s41416-025-03189-w
- Load: `Catalog().dataset("9Q4E5JkB8ygq6wLS0000").to_sdata()`


<a id="mibi-tof-breast-2g1qcrzryjruy4df0000"></a>
## Human breast

- uid: `2g1qcrzrYjRUy4DF0000`
- Page: /datasets/mibi-tof-breast-2g1qcrzryjruy4df0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 2,672
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("2g1qcrzrYjRUy4DF0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-k40fojdcz84ktn0s0000"></a>
## Human kidney

- uid: `k40FOjdcZ84KtN0s0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-k40fojdcz84ktn0s0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 9,362
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2022-01-31_21h54m57s
- Load: `Catalog().dataset("k40FOjdcZ84KtN0s0000").to_sdata()`


<a id="mibi-tof-breast-8qi2mgsnwj5y7hfi0000"></a>
## Human breast

- uid: `8qi2MGsNwj5y7hfI0000`
- Page: /datasets/mibi-tof-breast-8qi2mgsnwj5y7hfi0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 482
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("8qi2MGsNwj5y7hfI0000").to_sdata()`