# SpatialData-DB datasets, shard f1

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="10x-xenium-skin-of-body-7q6h5acppm7suuoq0000"></a>
## Human skin of body

- uid: `7q6h5acppM7SuuOq0000`
- Page: /datasets/10x-xenium-skin-of-body-7q6h5acppm7suuoq0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: skin of body
- Modality: RNA
- Observations (cells): 10,662
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE301280
- Load: `Catalog().dataset("7q6h5acppM7SuuOq0000").to_sdata()`


<a id="visium-spatial-gene-expression-pancreas-bjajgsrwh3pxpcjh0000"></a>
## Mouse pancreas

- uid: `bjAjgsrWH3PxpCjh0000`
- Page: /datasets/visium-spatial-gene-expression-pancreas-bjajgsrwh3pxpcjh0000/
- Technology: Visium
- Organism: mouse
- Tissue: pancreas
- Condition: pancreatitis
- Modality: RNA
- Observations (spots): 736
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE296582
- Publication: https://doi.org/10.1016/j.jcmgh.2025.101536
- Collections: [geo-gse296582](/collections/md/6.md#geo-gse296582)
- Load: `Catalog().dataset("bjAjgsrWH3PxpCjh0000").to_sdata()`


<a id="visium-spatial-gene-expression-spinal-cord-gqx0skui2rz99ifg0000"></a>
## Mouse spinal cord

- uid: `GQX0skUI2RZ99IFg0000`
- Page: /datasets/visium-spatial-gene-expression-spinal-cord-gqx0skui2rz99ifg0000/
- Technology: Visium
- Organism: mouse
- Tissue: spinal cord
- Modality: RNA
- Observations (spots): 585
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41586-022-05385-7
- Publication: https://doi.org/10.1038/s41586-022-05385-7
- Collections: [doi-10-1038-s41586-022-05385-7](/collections/md/a.md#doi-10-1038-s41586-022-05385-7)
- Load: `Catalog().dataset("GQX0skUI2RZ99IFg0000").to_sdata()`


<a id="visium-spatial-gene-expression-trunk-x38xfjx03r2bgccf0000"></a>
## Mouse trunk

- uid: `x38XfjX03r2BgcCf0000`
- Page: /datasets/visium-spatial-gene-expression-trunk-x38xfjx03r2bgccf0000/
- Technology: Visium
- Organism: mouse
- Tissue: trunk
- Modality: RNA
- Observations (spots): 198
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE160137
- Publication: https://doi.org/10.1038/s41467-021-22931-5
- Collections: [geo-gse160137](/collections/md/3.md#geo-gse160137)
- Load: `Catalog().dataset("x38XfjX03r2BgcCf0000").to_sdata()`


<a id="visium-spatial-gene-expression-skin-of-body-e0vtoymthl8ak2lm0000"></a>
## Human skin of body

- uid: `E0VtOymTHL8Ak2LM0000`
- Page: /datasets/visium-spatial-gene-expression-skin-of-body-e0vtoymthl8ak2lm0000/
- Technology: Visium
- Organism: human
- Tissue: skin of body
- Condition: skin squamous cell carcinoma
- Modality: RNA
- Observations (spots): 696
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE144239
- Publication: https://doi.org/10.1016/j.cell.2020.05.039
- Collections: [geo-gse144239](/collections/md/0.md#geo-gse144239)
- Load: `Catalog().dataset("E0VtOymTHL8Ak2LM0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-vt56nlqvkxtoayhh0001"></a>
## Mouse brain

- uid: `vT56nlQVKxTOAyhH0001`
- Page: /datasets/visium-spatial-gene-expression-brain-vt56nlqvkxtoayhh0001/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 2,865
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE283283
- Collections: [geo-gse283283](/collections/md/4.md#geo-gse283283)
- Load: `Catalog().dataset("vT56nlQVKxTOAyhH0001").to_sdata()`


<a id="visium-spatial-gene-expression-breast-9khiv9hz7hw9hetw0000"></a>
## Mouse breast

- uid: `9kHIV9Hz7hw9hEtW0000`
- Page: /datasets/visium-spatial-gene-expression-breast-9khiv9hz7hw9hetw0000/
- Technology: Visium
- Organism: mouse
- Tissue: breast
- Condition: breast carcinoma
- Modality: RNA
- Observations (spots): 1,122
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE299631
- Collections: [geo-gse299631](/collections/md/e.md#geo-gse299631)
- Load: `Catalog().dataset("9kHIV9Hz7hw9hEtW0000").to_sdata()`


<a id="visium-spatial-gene-expression-primary-motor-cortex-vx0ogyqpdwbli2hj0000"></a>
## Human primary motor cortex

- uid: `VX0ogyqPdwbLI2Hj0000`
- Page: /datasets/visium-spatial-gene-expression-primary-motor-cortex-vx0ogyqpdwbli2hj0000/
- Technology: Visium
- Organism: human
- Tissue: primary motor cortex
- Condition: progressive supranuclear palsy
- Modality: RNA
- Observations (spots): 3,508
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9097321
- Collections: [geo-gse302160](/collections/md/b.md#geo-gse302160)
- Load: `Catalog().dataset("VX0ogyqPdwbLI2Hj0000").to_sdata()`


<a id="visium-spatial-gene-expression-primary-motor-cortex-vjwticx45oxd2ms00000"></a>
## Human primary motor cortex

- uid: `VJWtIcx45OxD2MS00000`
- Page: /datasets/visium-spatial-gene-expression-primary-motor-cortex-vjwticx45oxd2ms00000/
- Technology: Visium
- Organism: human
- Tissue: primary motor cortex
- Condition: progressive supranuclear palsy
- Modality: RNA
- Observations (spots): 4,690
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9097320
- Collections: [geo-gse302160](/collections/md/b.md#geo-gse302160)
- Load: `Catalog().dataset("VJWtIcx45OxD2MS00000").to_sdata()`


<a id="10x-xenium-subcutaneous-adipose-tissue-1entthjifdjebqak0000"></a>
## Human subcutaneous adipose tissue

- uid: `1EnTtHjifdJebQAk0000`
- Page: /datasets/10x-xenium-subcutaneous-adipose-tissue-1entthjifdjebqak0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: subcutaneous adipose tissue
- Modality: RNA
- Observations (cells): 5,663
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE295862
- Publication: https://doi.org/10.1038/s41586-025-09233-2
- Load: `Catalog().dataset("1EnTtHjifdJebQAk0000").to_sdata()`


<a id="visium-spatial-gene-expression-pancreas-skram7y8bvdpfzh00000"></a>
## Human pancreas

- uid: `sKRAm7y8bvdPFzh00000`
- Page: /datasets/visium-spatial-gene-expression-pancreas-skram7y8bvdpfzh00000/
- Technology: Visium
- Organism: human
- Tissue: pancreas
- Condition: exocrine pancreatic carcinoma
- Modality: RNA
- Observations (spots): 3,947
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7498811
- Collections: [geo-gse235315](/collections/md/5.md#geo-gse235315)
- Load: `Catalog().dataset("sKRAm7y8bvdPFzh00000").to_sdata()`


<a id="10x-xenium-brain-6mxx4bs8py0kuupw0000"></a>
## Mouse brain

- uid: `6MXx4bS8Py0kuUPw0000`
- Page: /datasets/10x-xenium-brain-6mxx4bs8py0kuupw0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 123,209
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE310599
- Load: `Catalog().dataset("6MXx4bS8Py0kuUPw0000").to_sdata()`


<a id="10x-xenium-oropharynx-ys72uteundc6wdjo0000"></a>
## Human oropharynx

- uid: `YS72utEuNdc6WdJO0000`
- Page: /datasets/10x-xenium-oropharynx-ys72uteundc6wdjo0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: oropharynx
- Condition: oropharynx squamous cell carcinoma
- Modality: RNA
- Observations (cells): 27,775
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE300147
- Publication: https://doi.org/10.1126/sciimmunol.aec3133
- Load: `Catalog().dataset("YS72utEuNdc6WdJO0000").to_sdata()`


<a id="visium-spatial-gene-expression-gray-matter-lymdxq4aqwkyqzfs0000"></a>
## Human gray matter

- uid: `LymdXq4aQwKyQzFs0000`
- Page: /datasets/visium-spatial-gene-expression-gray-matter-lymdxq4aqwkyqzfs0000/
- Technology: Visium
- Organism: human
- Tissue: gray matter
- Condition: multiple sclerosis
- Modality: RNA
- Observations (spots): 4,673
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM6368819
- Collections: [geo-gse208747](/collections/md/d.md#geo-gse208747)
- Load: `Catalog().dataset("LymdXq4aQwKyQzFs0000").to_sdata()`


<a id="visium-spatial-gene-expression-breast-ziwl7pews9xxjcel0000"></a>
## Mouse breast

- uid: `zIWl7pEWs9XxJCeL0000`
- Page: /datasets/visium-spatial-gene-expression-breast-ziwl7pews9xxjcel0000/
- Technology: Visium
- Organism: mouse
- Tissue: breast
- Condition: breast carcinoma
- Modality: RNA
- Observations (spots): 3,907
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE299631
- Collections: [geo-gse299631](/collections/md/e.md#geo-gse299631)
- Load: `Catalog().dataset("zIWl7pEWs9XxJCeL0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-vas7ixbywlx94gns0000"></a>
## Human liver

- uid: `vas7ixBYWlX94Gns0000`
- Page: /datasets/visium-spatial-gene-expression-liver-vas7ixbywlx94gns0000/
- Technology: Visium
- Organism: human
- Tissue: liver
- Condition: cholestasis
- Modality: RNA
- Observations (spots): 1,712
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE338525
- Publication: https://doi.org/10.1097/HC9.0000000000000992
- Collections: [geo-gse338525](/collections/md/1.md#geo-gse338525)
- Load: `Catalog().dataset("vas7ixBYWlX94Gns0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-3u6rx1nt239oczif0000"></a>
## Human kidney

- uid: `3u6rx1nT239ocZif0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-3u6rx1nt239oczif0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 28,400
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2023-04-24_20h53m49s
- Load: `Catalog().dataset("3u6rx1nT239ocZif0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-vaywe0rmhhyzj0pk0000"></a>
## Human kidney

- uid: `VayWe0RMHHyZj0pk0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-vaywe0rmhhyzj0pk0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 33,634
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2023-04-24_20h59m42s
- Load: `Catalog().dataset("VayWe0RMHHyZj0pk0000").to_sdata()`


<a id="stereo-seq-lung-rrgfb5coaowmit7d0000"></a>
## Mouse lung

- uid: `rrgfb5COaOWMit7D0000`
- Page: /datasets/stereo-seq-lung-rrgfb5coaowmit7d0000/
- Technology: Stereo-seq
- Organism: mouse
- Tissue: lung
- Modality: RNA
- Observations: 110,554
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE333479
- Collections: [geo-gse333479](/collections/md/4.md#geo-gse333479)
- Load: `Catalog().dataset("rrgfb5COaOWMit7D0000").to_sdata()`


<a id="vizgen-merscope-skin-of-body-8qgw2ao6iuya1v9p0000"></a>
## Human skin of body

- uid: `8qGw2Ao6IUYa1v9P0000`
- Page: /datasets/vizgen-merscope-skin-of-body-8qgw2ao6iuya1v9p0000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: skin of body
- Modality: RNA
- Observations (cells): 8,942
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2376
- Publication: https://doi.org/10.1038/s41588-026-02552-8
- Collections: [bia-s-biad2376](/collections/md/f.md#bia-s-biad2376)
- Load: `Catalog().dataset("8qGw2Ao6IUYa1v9P0000").to_sdata()`


<a id="mibi-tof-breast-jzlqwn3ujvsls7qt0000"></a>
## Human breast

- uid: `jZLqWN3uJVSlS7Qt0000`
- Page: /datasets/mibi-tof-breast-jzlqwn3ujvsls7qt0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 4,057
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("jZLqWN3uJVSlS7Qt0000").to_sdata()`


<a id="10x-xenium-sural-nerve-kq3ru3mc7eetz43e0000"></a>
## Human sural nerve

- uid: `kq3ru3Mc7eeTZ43E0000`
- Page: /datasets/10x-xenium-sural-nerve-kq3ru3mc7eetz43e0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: sural nerve
- Condition: polyneuropathy
- Modality: RNA
- Observations (cells): 7,592
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE285984
- Publication: https://doi.org/10.1038/s41467-025-62964-8
- Load: `Catalog().dataset("kq3ru3Mc7eeTZ43E0000").to_sdata()`


<a id="10x-xenium-rectum-1agafd3tdmdrxmdg0000"></a>
## Human rectum

- uid: `1agAfD3tdmdRXMDg0000`
- Page: /datasets/10x-xenium-rectum-1agafd3tdmdrxmdg0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: rectum
- Condition: Crohn disease
- Modality: RNA
- Observations (cells): 51,458
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE330953
- Publication: https://doi.org/10.1126/science.aeh7112
- Load: `Catalog().dataset("1agAfD3tdmdRXMDg0000").to_sdata()`


<a id="10x-xenium-lung-kphep4lx2chibhlc0000"></a>
## Human lung

- uid: `kPhep4LX2chibHlc0000`
- Page: /datasets/10x-xenium-lung-kphep4lx2chibhlc0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: lung
- Condition: squamous cell lung carcinoma
- Modality: RNA
- Observations (cells): 63,763
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE311609
- Publication: https://doi.org/10.1038/s41592-026-03089-8
- Load: `Catalog().dataset("kPhep4LX2chibHlc0000").to_sdata()`


<a id="phenocycler-fusion-lymph-node-usj3mv0neeqgbee30000"></a>
## Human lymph node

- uid: `Usj3Mv0neEqGBEe30000`
- Page: /datasets/phenocycler-fusion-lymph-node-usj3mv0neeqgbee30000/
- Technology: PhenoCycler-Fusion
- Organism: human
- Tissue: lymph node
- Modality: protein
- Observations (cells): 20,415
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2100
- Publication: https://doi.org/10.1101/2025.04.29.651202
- Collections: [bia-s-biad2100](/collections/md/a.md#bia-s-biad2100)
- Load: `Catalog().dataset("Usj3Mv0neEqGBEe30000").to_sdata()`


<a id="10x-xenium-lung-nb8cjozstimhsfov0000"></a>
## Mouse lung

- uid: `Nb8CJozstIMhsFoV0000`
- Page: /datasets/10x-xenium-lung-nb8cjozstimhsfov0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: lung
- Condition: pulmonary fibrosis
- Modality: RNA
- Observations (cells): 195,291
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE325253
- Publication: https://doi.org/10.1126/scitranslmed.ads2673
- Load: `Catalog().dataset("Nb8CJozstIMhsFoV0000").to_sdata()`


<a id="10x-xenium-breast-pjrketq1adqxvbzk0000"></a>
## Human breast

- uid: `pJrkEtq1aDQxvbzk0000`
- Page: /datasets/10x-xenium-breast-pjrketq1adqxvbzk0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: breast
- Condition: breast cancer
- Modality: RNA
- Observations (cells): 38,610
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE311609
- Publication: https://doi.org/10.1038/s41592-026-03089-8
- Load: `Catalog().dataset("pJrkEtq1aDQxvbzk0000").to_sdata()`


<a id="mibi-tof-breast-hxbux6igultjofez0000"></a>
## Human breast

- uid: `HXBuX6IGUltJoFez0000`
- Page: /datasets/mibi-tof-breast-hxbux6igultjofez0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 1,867
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("HXBuX6IGUltJoFez0000").to_sdata()`