# SpatialData-DB datasets, shard f0

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-spatial-gene-expression-colon-trzjbynl7reu2wly0000"></a>
## Rat colon

- uid: `tRzJBynl7REu2WLy0000`
- Page: /datasets/visium-spatial-gene-expression-colon-trzjbynl7reu2wly0000/
- Technology: Visium
- Organism: rat
- Tissue: colon
- Condition: adenocarcinoma
- Modality: RNA
- Observations (spots): 1,286
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE211895
- Publication: https://doi.org/10.1016/j.crmeth.2022.100340
- Collections: [geo-gse211895](/collections/md/d.md#geo-gse211895)
- Load: `Catalog().dataset("tRzJBynl7REu2WLy0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-w66xhcttlyb8nou90000"></a>
## Mouse brain

- uid: `W66XhCtTlYB8nOU90000`
- Page: /datasets/visium-spatial-gene-expression-brain-w66xhcttlyb8nou90000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Condition: traumatic brain injury
- Modality: RNA
- Observations (spots): 4,194
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE319409
- Publication: https://doi.org/10.1186/s40478-025-02219-1
- Collections: [geo-gse319409](/collections/md/8.md#geo-gse319409)
- Load: `Catalog().dataset("W66XhCtTlYB8nOU90000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-casn2tkdgaqzel7o0000"></a>
## Human brain

- uid: `CaSn2tKdGAQzeL7O0000`
- Page: /datasets/visium-spatial-gene-expression-brain-casn2tkdgaqzel7o0000/
- Technology: Visium
- Organism: human
- Tissue: brain
- Modality: RNA
- Observations (spots): 3,673
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41593-020-00787-0#data-availability
- Publication: https://doi.org/10.1038/s41593-020-00787-0
- Collections: [doi-10-1038-s41593-020-00787-0](/collections/md/3.md#doi-10-1038-s41593-020-00787-0)
- Load: `Catalog().dataset("CaSn2tKdGAQzeL7O0000").to_sdata()`


<a id="visium-spatial-gene-expression-heart-qamhhu0cgrwznp3s0000"></a>
## Human heart

- uid: `QAmHHU0cGRwZNP3S0000`
- Page: /datasets/visium-spatial-gene-expression-heart-qamhhu0cgrwznp3s0000/
- Technology: Visium
- Organism: human
- Tissue: heart
- Modality: RNA
- Observations (spots): 3,448
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41586-023-06311-1#data-availability
- Publication: https://doi.org/10.1038/s41586-023-06311-1
- Collections: [doi-10-1038-s41586-023-06311-1](/collections/md/f.md#doi-10-1038-s41586-023-06311-1)
- Load: `Catalog().dataset("QAmHHU0cGRwZNP3S0000").to_sdata()`


<a id="visium-spatial-gene-expression-uterus-6bltulwavasecj7r0000"></a>
## Mouse uterus

- uid: `6bLtulWAVASecJ7R0000`
- Page: /datasets/visium-spatial-gene-expression-uterus-6bltulwavasecj7r0000/
- Technology: Visium
- Organism: mouse
- Tissue: uterus
- Condition: Zika virus infectious disease
- Modality: RNA
- Observations (spots): 1,182
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://pubmed.ncbi.nlm.nih.gov/37598997/
- Publication: https://doi.org/10.1016/j.ajog.2023.08.012
- Collections: [doi-10-1016-j-ajog-2023-08-012](/collections/md/6.md#doi-10-1016-j-ajog-2023-08-012)
- Load: `Catalog().dataset("6bLtulWAVASecJ7R0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-bbuw57hbskwhxynx0000"></a>
## Mouse liver

- uid: `bBuW57HBSkwHXYNX0000`
- Page: /datasets/visium-spatial-gene-expression-liver-bbuw57hbskwhxynx0000/
- Technology: Visium
- Organism: mouse
- Tissue: liver
- Condition: metabolic dysfunction-associated steatohepatitis
- Modality: RNA
- Observations (spots): 2,527
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE248077
- Collections: [geo-gse248077](/collections/md/f.md#geo-gse248077)
- Load: `Catalog().dataset("bBuW57HBSkwHXYNX0000").to_sdata()`


<a id="visium-spatial-gene-expression-bone-marrow-rsoulldrlqeswv5b0000"></a>
## Human bone marrow

- uid: `RsOUlldRLqesWV5B0000`
- Page: /datasets/visium-spatial-gene-expression-bone-marrow-rsoulldrlqeswv5b0000/
- Technology: Visium
- Organism: human
- Tissue: bone marrow
- Condition: plasma cell myeloma
- Modality: RNA
- Observations (spots): 2,993
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE269875
- Publication: https://doi.org/10.1111/acel.70475
- Collections: [geo-gse269875](/collections/md/4.md#geo-gse269875)
- Load: `Catalog().dataset("RsOUlldRLqesWV5B0000").to_sdata()`


<a id="visium-spatial-gene-expression-bone-element-zqc9cbxajrdkqhj30000"></a>
## Human bone element

- uid: `ZqC9cBxaJrdKqHJ30000`
- Page: /datasets/visium-spatial-gene-expression-bone-element-zqc9cbxajrdkqhj30000/
- Technology: Visium
- Organism: human
- Tissue: bone element
- Condition: osteosarcoma
- Modality: RNA
- Observations (spots): 1,243
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE293065
- Publication: https://doi.org/10.1038/s41467-026-74603-x
- Collections: [geo-gse293065](/collections/md/7.md#geo-gse293065)
- Load: `Catalog().dataset("ZqC9cBxaJrdKqHJ30000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-wk9rxjv5ke08vg0x0000"></a>
## Mouse brain

- uid: `Wk9rxjV5kE08Vg0x0000`
- Page: /datasets/visium-spatial-gene-expression-brain-wk9rxjv5ke08vg0x0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Condition: traumatic brain injury
- Modality: RNA
- Observations (spots): 3,027
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE313407
- Publication: https://doi.org/10.1177/08977151251390528
- Collections: [geo-gse313407](/collections/md/3.md#geo-gse313407)
- Load: `Catalog().dataset("Wk9rxjV5kE08Vg0x0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-5se6wimi9woak0hj0000"></a>
## Mouse liver

- uid: `5Se6wiMI9WOak0HJ0000`
- Page: /datasets/visium-spatial-gene-expression-liver-5se6wimi9woak0hj0000/
- Technology: Visium
- Organism: mouse
- Tissue: liver
- Condition: alcoholic liver diseases
- Modality: RNA
- Observations (spots): 1,989
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE320442
- Collections: [geo-gse320442](/collections/md/7.md#geo-gse320442)
- Load: `Catalog().dataset("5Se6wiMI9WOak0HJ0000").to_sdata()`


<a id="visium-spatial-gene-expression-lymph-node-lxxfoxgjkxlwqhwk0000"></a>
## Human lymph node

- uid: `LxXFOxgjkXlWQHWK0000`
- Page: /datasets/visium-spatial-gene-expression-lymph-node-lxxfoxgjkxlwqhwk0000/
- Technology: Visium
- Organism: human
- Tissue: lymph node
- Condition: breast cancer
- Modality: RNA
- Observations (spots): 4,346
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE189042
- Load: `Catalog().dataset("LxXFOxgjkXlWQHWK0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-m8di5e6bdcqkqlds0000"></a>
## Human kidney

- uid: `M8DI5e6bdcQKQLDS0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-m8di5e6bdcqkqlds0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 42,158
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2020-12-04_18h52m45s
- Load: `Catalog().dataset("M8DI5e6bdcQKQLDS0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-sxvb6r9ipsbvm7pw0000"></a>
## Mouse brain

- uid: `sxvb6r9IpSBvM7pW0000`
- Page: /datasets/visium-spatial-gene-expression-brain-sxvb6r9ipsbvm7pw0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Condition: traumatic brain injury
- Modality: RNA
- Observations (spots): 3,136
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE313407
- Publication: https://doi.org/10.1177/08977151251390528
- Collections: [geo-gse313407](/collections/md/3.md#geo-gse313407)
- Load: `Catalog().dataset("sxvb6r9IpSBvM7pW0000").to_sdata()`


<a id="visium-spatial-gene-expression-intestine-eoyjcos76zxktod70000"></a>
## Mouse intestine

- uid: `eoYJCOs76zxKToD70000`
- Page: /datasets/visium-spatial-gene-expression-intestine-eoyjcos76zxktod70000/
- Technology: Visium
- Organism: mouse
- Tissue: intestine
- Modality: RNA
- Observations (spots): 2,708
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE320442
- Collections: [geo-gse320442](/collections/md/7.md#geo-gse320442)
- Load: `Catalog().dataset("eoYJCOs76zxKToD70000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-gcrbe7egi7wzpbua0000"></a>
## Human kidney

- uid: `GcRbe7Egi7wzpBua0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-gcrbe7egi7wzpbua0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 5,727
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2020-12-09_02h35m23s
- Load: `Catalog().dataset("GcRbe7Egi7wzpBua0000").to_sdata()`


<a id="mibi-tof-breast-f8j76jnrjkepztcr0000"></a>
## Human breast

- uid: `F8j76jNRJKEpZtCR0000`
- Page: /datasets/mibi-tof-breast-f8j76jnrjkepztcr0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 3,654
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("F8j76jNRJKEpZtCR0000").to_sdata()`


<a id="phenocycler-fusion-lymph-node-qo3kb5dxnzvgpbgy0000"></a>
## Human lymph node

- uid: `QO3kb5dxNZvGPBGy0000`
- Page: /datasets/phenocycler-fusion-lymph-node-qo3kb5dxnzvgpbgy0000/
- Technology: PhenoCycler-Fusion
- Organism: human
- Tissue: lymph node
- Condition: diffuse large B-cell lymphoma
- Modality: protein
- Observations (cells): 9,745
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2100
- Publication: https://doi.org/10.1101/2025.04.29.651202
- Collections: [bia-s-biad2100](/collections/md/a.md#bia-s-biad2100)
- Load: `Catalog().dataset("QO3kb5dxNZvGPBGy0000").to_sdata()`


<a id="mibi-tof-liver-4e0bzfc27v4mqarp0000"></a>
## Human liver

- uid: `4E0BZFC27v4MqarP0000`
- Page: /datasets/mibi-tof-liver-4e0bzfc27v4mqarp0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: liver
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 1,340
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1288
- Collections: [bia-s-biad1288](/collections/md/b.md#bia-s-biad1288)
- Load: `Catalog().dataset("4E0BZFC27v4MqarP0000").to_sdata()`


<a id="10x-xenium-brain-bb4vivvj8lb1pw3m0000"></a>
## Human brain

- uid: `bb4vIVvj8lb1pW3M0000`
- Page: /datasets/10x-xenium-brain-bb4vivvj8lb1pw3m0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: brain
- Condition: ependymoma
- Modality: RNA
- Observations (cells): 150,258
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE260452
- Publication: https://doi.org/10.1038/s41586-026-10214-2
- Load: `Catalog().dataset("bb4vIVvj8lb1pW3M0000").to_sdata()`


<a id="vizgen-merscope-brain-bp5bouqqektmfqm50000"></a>
## Mouse brain

- uid: `BP5BoUqqeKTMFqm50000`
- Page: /datasets/vizgen-merscope-brain-bp5bouqqektmfqm50000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 9,877
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE329718
- Load: `Catalog().dataset("BP5BoUqqeKTMFqm50000").to_sdata()`


<a id="mibi-tof-breast-60ugl5ukx9i0npem0000"></a>
## Human breast

- uid: `60uGL5Ukx9I0npEm0000`
- Page: /datasets/mibi-tof-breast-60ugl5ukx9i0npem0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 3,713
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("60uGL5Ukx9I0npEm0000").to_sdata()`


<a id="phenocycler-fusion-lymph-node-pn65gdrlhxds5kez0000"></a>
## Human lymph node

- uid: `pN65GdRLHxDs5KEZ0000`
- Page: /datasets/phenocycler-fusion-lymph-node-pn65gdrlhxds5kez0000/
- Technology: PhenoCycler-Fusion
- Organism: human
- Tissue: lymph node
- Condition: diffuse large B-cell lymphoma
- Modality: protein
- Observations (cells): 11,330
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2100
- Publication: https://doi.org/10.1101/2025.04.29.651202
- Collections: [bia-s-biad2100](/collections/md/a.md#bia-s-biad2100)
- Load: `Catalog().dataset("pN65GdRLHxDs5KEZ0000").to_sdata()`