# SpatialData-DB datasets, shard ee

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-spatial-gene-expression-colon-x6t73hyfgginufza0000"></a>
## Mouse colon

- uid: `X6t73hYfGgINUFza0000`
- Page: /datasets/visium-spatial-gene-expression-colon-x6t73hyfgginufza0000/
- Technology: Visium
- Organism: mouse
- Tissue: colon
- Condition: colitis
- Modality: RNA
- Observations (spots): 4,953
- Licence: CC BY 4.0
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE334067
- Publication: https://doi.org/10.1038/s41588-026-02673-0
- Collections: [geo-gse334067](/collections/md/b.md#geo-gse334067)
- Load: `Catalog().dataset("X6t73hYfGgINUFza0000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-6q688szwlcqxlmq20000"></a>
## Mouse spinal cord

- uid: `6Q688SZwlCqXLmq20000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-6q688szwlcqxlmq20000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 352
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("6Q688SZwlCqXLmq20000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-g1yn7lskkximesxv0000"></a>
## Mouse brain

- uid: `G1yn7lSkkXIMeSXv0000`
- Page: /datasets/visium-spatial-gene-expression-brain-g1yn7lskkximesxv0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 4,575
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.biorxiv.org/content/10.1101/2022.10.25.513696v1.full
- Publication: https://doi.org/10.1101/2022.10.25.513696
- Collections: [doi-10-1101-2022-10-25-513696](/collections/md/4.md#doi-10-1101-2022-10-25-513696)
- Load: `Catalog().dataset("G1yn7lSkkXIMeSXv0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-pqepl0e65imfxnpa0000"></a>
## Mouse brain

- uid: `pQEpL0e65imFxNPa0000`
- Page: /datasets/visium-spatial-gene-expression-brain-pqepl0e65imfxnpa0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 2,320
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source:                                             
- Collections: [hest-regional-differential-gene-expression-analyses-of-brains-from-four-24w-old-nf1-mice](/collections/md/a.md#hest-regional-differential-gene-expression-analyses-of-brains-from-four-24w-old-nf1-mice)
- Load: `Catalog().dataset("pQEpL0e65imFxNPa0000").to_sdata()`


<a id="visium-spatial-gene-expression-skeletal-muscle-tissue-k7uqsprpmbnr31rb0000"></a>
## Mouse skeletal muscle tissue

- uid: `K7uQsPrpMBnR31rB0000`
- Page: /datasets/visium-spatial-gene-expression-skeletal-muscle-tissue-k7uqsprpmbnr31rb0000/
- Technology: Visium
- Organism: mouse
- Tissue: skeletal muscle tissue
- Modality: RNA
- Observations (spots): 4,992
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41587-022-01517-6
- Publication: https://doi.org/10.1038/s41587-022-01517-6
- Collections: [doi-10-1038-s41587-022-01517-6](/collections/md/2.md#doi-10-1038-s41587-022-01517-6)
- Load: `Catalog().dataset("K7uQsPrpMBnR31rB0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-krq3ubpyqnpolzgk0000"></a>
## Human brain

- uid: `kRq3ubpyQnPolzGk0000`
- Page: /datasets/visium-spatial-gene-expression-brain-krq3ubpyqnpolzgk0000/
- Technology: Visium
- Organism: human
- Tissue: brain
- Condition: embryonal tumor with multilayered rosettes
- Modality: RNA
- Observations (spots): 2,668
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE224477
- Publication: https://doi.org/10.1038/s41467-025-60442-9
- Collections: [geo-gse224477](/collections/md/1.md#geo-gse224477)
- Load: `Catalog().dataset("kRq3ubpyQnPolzGk0000").to_sdata()`


<a id="visium-spatial-gene-expression-lung-dwxmpslvvp2ugggw0000"></a>
## Human lung

- uid: `dWXMpsLvvP2UggGW0000`
- Page: /datasets/visium-spatial-gene-expression-lung-dwxmpslvvp2ugggw0000/
- Technology: Visium
- Organism: human
- Tissue: lung
- Condition: obsolete idiopathic pulmonary fibrosis
- Modality: RNA
- Observations (spots): 2,459
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE285246
- Publication: https://doi.org/10.1183/13993003.00022-2025
- Collections: [geo-gse285246](/collections/md/b.md#geo-gse285246)
- Load: `Catalog().dataset("dWXMpsLvvP2UggGW0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-vekx6mhmkspsokzq0000"></a>
## Mouse liver

- uid: `Vekx6mhmksPsokzq0000`
- Page: /datasets/visium-spatial-gene-expression-liver-vekx6mhmkspsokzq0000/
- Technology: Visium
- Organism: mouse
- Tissue: liver
- Condition: malaria
- Modality: RNA
- Observations (spots): 2,902
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE268068
- Publication: https://doi.org/10.1038/s41467-024-51418-2
- Collections: [geo-gse268068](/collections/md/b.md#geo-gse268068)
- Load: `Catalog().dataset("Vekx6mhmksPsokzq0000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-4kshzmuv58y9mzia0000"></a>
## Human basal ganglion

- uid: `4KsHzMUV58y9mzia0000`
- Page: /datasets/vizgen-merscope-basal-ganglion-4kshzmuv58y9mzia0000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 62,922
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Collections: [abc-hmba-merscope-h22-30-001-bg](/collections/md/b.md#abc-hmba-merscope-h22-30-001-bg)
- Load: `Catalog().dataset("4KsHzMUV58y9mzia0000").to_sdata()`


<a id="10x-xenium-liver-ee1qqj17f5m2vmme0000"></a>
## Mouse liver

- uid: `Ee1qQj17f5M2vMme0000`
- Page: /datasets/10x-xenium-liver-ee1qqj17f5m2vmme0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: liver
- Modality: RNA
- Observations (cells): 5,285
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8945653
- Publication: https://doi.org/10.1038/s41588-026-02671-2
- Collections: [geo-gse271693](/collections/md/1.md#geo-gse271693)
- Load: `Catalog().dataset("Ee1qQj17f5M2vMme0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-eva11yqlxnvmzhgz0001"></a>
## Mouse liver

- uid: `EVA11YqLxNvmzhGz0001`
- Page: /datasets/visium-spatial-gene-expression-liver-eva11yqlxnvmzhgz0001/
- Technology: Visium
- Organism: mouse
- Tissue: liver
- Condition: hepatocellular carcinoma
- Modality: RNA
- Observations (spots): 2,698
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE318726
- Collections: [geo-gse318726](/collections/md/b.md#geo-gse318726)
- Load: `Catalog().dataset("EVA11YqLxNvmzhGz0001").to_sdata()`


<a id="visium-spatial-gene-expression-pancreas-8rhw6jtzgcdrvwsy0000"></a>
## Human pancreas

- uid: `8RHw6jtZgcdrVWsY0000`
- Page: /datasets/visium-spatial-gene-expression-pancreas-8rhw6jtzgcdrvwsy0000/
- Technology: Visium
- Organism: human
- Tissue: pancreas
- Condition: pancreatic ductal adenocarcinoma
- Modality: RNA
- Observations (spots): 4,440
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE282302
- Publication: https://doi.org/10.1016/j.celrep.2025.116827
- Collections: [geo-gse282302](/collections/md/d.md#geo-gse282302)
- Load: `Catalog().dataset("8RHw6jtZgcdrVWsY0000").to_sdata()`


<a id="visium-spatial-gene-expression-kidney-zajkyfhbdgaom0bp0000"></a>
## Human kidney

- uid: `zaJkyFHBdGaOm0bP0000`
- Page: /datasets/visium-spatial-gene-expression-kidney-zajkyfhbdgaom0bp0000/
- Technology: Visium
- Organism: human
- Tissue: kidney
- Condition: diabetic kidney disease
- Modality: RNA
- Observations (spots): 977
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE307817
- Publication: https://doi.org/10.1016/j.kint.2026.03.020
- Collections: [geo-gse307817](/collections/md/a.md#geo-gse307817)
- Load: `Catalog().dataset("zaJkyFHBdGaOm0bP0000").to_sdata()`


<a id="visium-spatial-gene-expression-kidney-s2bgd9uqmhk6ieev0000"></a>
## Mouse kidney

- uid: `s2bGD9UQmHk6Ieev0000`
- Page: /datasets/visium-spatial-gene-expression-kidney-s2bgd9uqmhk6ieev0000/
- Technology: Visium
- Organism: mouse
- Tissue: kidney
- Condition: renal fibrosis
- Modality: RNA
- Observations (spots): 1,974
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE273978
- Publication: https://doi.org/10.1124/jpet.124.002330
- Collections: [geo-gse273978](/collections/md/9.md#geo-gse273978)
- Load: `Catalog().dataset("s2bGD9UQmHk6Ieev0000").to_sdata()`


<a id="visium-spatial-gene-expression-peritoneum-gpdkzmy2ubfx0h4m0000"></a>
## Human peritoneum

- uid: `GpDkzMY2ubfx0h4m0000`
- Page: /datasets/visium-spatial-gene-expression-peritoneum-gpdkzmy2ubfx0h4m0000/
- Technology: Visium
- Organism: human
- Tissue: peritoneum
- Condition: pancreatic ductal adenocarcinoma
- Modality: RNA
- Observations (spots): 2,696
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8452890
- Collections: [geo-gse274557](/collections/md/1.md#geo-gse274557)
- Load: `Catalog().dataset("GpDkzMY2ubfx0h4m0000").to_sdata()`


<a id="visium-spatial-gene-expression-amygdala-wgtpfsfrlsepf8pb0000"></a>
## Human amygdala

- uid: `WGtpfSFRlSEpf8pb0000`
- Page: /datasets/visium-spatial-gene-expression-amygdala-wgtpfsfrlsepf8pb0000/
- Technology: Visium
- Organism: human
- Tissue: amygdala
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE342709
- Collections: [geo-gse342709](/collections/md/a.md#geo-gse342709)
- Load: `Catalog().dataset("WGtpfSFRlSEpf8pb0000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-az1m8bnvpsxoeh740000"></a>
## Macaque basal ganglion

- uid: `Az1m8bNVPSxOEH740000`
- Page: /datasets/vizgen-merscope-basal-ganglion-az1m8bnvpsxoeh740000/
- Technology: Vizgen MERSCOPE
- Organism: macaque
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 772
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Collections: [abc-hmba-merscope-qm23-50-001-bg](/collections/md/d.md#abc-hmba-merscope-qm23-50-001-bg)
- Load: `Catalog().dataset("Az1m8bNVPSxOEH740000").to_sdata()`


<a id="vizgen-merscope-brain-wz0j8ksb6bmqfzua0000"></a>
## Mouse brain

- uid: `Wz0J8KSb6BmqfzUa0000`
- Page: /datasets/vizgen-merscope-brain-wz0j8ksb6bmqfzua0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 13,971
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE329718
- Load: `Catalog().dataset("Wz0J8KSb6BmqfzUa0000").to_sdata()`


<a id="mibi-tof-breast-ofphun6letivecvk0000"></a>
## Human breast

- uid: `OfphUn6LEtIVecvk0000`
- Page: /datasets/mibi-tof-breast-ofphun6letivecvk0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 2,516
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("OfphUn6LEtIVecvk0000").to_sdata()`


<a id="mibi-tof-breast-erzwleiplgapbv3z0000"></a>
## Human breast

- uid: `eRzWLEipLGaPbv3z0000`
- Page: /datasets/mibi-tof-breast-erzwleiplgapbv3z0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 3,100
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("eRzWLEipLGaPbv3z0000").to_sdata()`


<a id="10x-xenium-hippocampal-formation-diloyuta0t9slmkf0000"></a>
## Human hippocampal formation

- uid: `dILoyUtA0T9slmkF0000`
- Page: /datasets/10x-xenium-hippocampal-formation-diloyuta0t9slmkf0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: hippocampal formation
- Modality: RNA
- Observations (cells): 29,499
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE335898
- Publication: https://doi.org/10.1016/j.cell.2026.07.007
- Load: `Catalog().dataset("dILoyUtA0T9slmkF0000").to_sdata()`


<a id="vizgen-merscope-brain-nlqf721wlloykmpb0001"></a>
## Mouse brain

- uid: `NLqF721wLLoykMPB0001`
- Page: /datasets/vizgen-merscope-brain-nlqf721wlloykmpb0001/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 45,896
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/MERFISH-C57BL6J-638850.html
- Publication: https://doi.org/10.1038/s41586-023-06812-z
- Collections: [abc-merfish-c57bl6j-638850](/collections/md/e.md#abc-merfish-c57bl6j-638850)
- Load: `Catalog().dataset("NLqF721wLLoykMPB0001").to_sdata()`


<a id="10x-xenium-pancreas-vypmyokvxprmpkhv0000"></a>
## Mouse pancreas

- uid: `vYpmYOkVXPRmpkhV0000`
- Page: /datasets/10x-xenium-pancreas-vypmyokvxprmpkhv0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: pancreas
- Condition: pancreatic ductal adenocarcinoma
- Modality: RNA
- Observations (cells): 68,589
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE341984
- Load: `Catalog().dataset("vYpmYOkVXPRmpkhV0000").to_sdata()`