# SpatialData-DB datasets, shard ed

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-spatial-gene-expression-colon-6qpipfknlyiwtfoa0000"></a>
## Mouse colon

- uid: `6qpipFKNlYIwtfOA0000`
- Page: /datasets/visium-spatial-gene-expression-colon-6qpipfknlyiwtfoa0000/
- Technology: Visium
- Organism: mouse
- Tissue: colon
- Condition: colitis
- Modality: RNA
- Observations (spots): 4,501
- Licence: CC BY 4.0
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE334067
- Publication: https://doi.org/10.1038/s41588-026-02673-0
- Collections: [geo-gse334067](/collections/md/b.md#geo-gse334067)
- Load: `Catalog().dataset("6qpipFKNlYIwtfOA0000").to_sdata()`


<a id="spatial-transcriptomics-brain-fghukrivdmo9xbil0000"></a>
## Mouse brain

- uid: `fGhuKrivDMO9XBIL0000`
- Page: /datasets/spatial-transcriptomics-brain-fghukrivdmo9xbil0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 279
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/sciadv.abb3446
- Publication: https://doi.org/10.1126/sciadv.abb3446
- Collections: [doi-10-1126-sciadv-abb3446](/collections/md/a.md#doi-10-1126-sciadv-abb3446)
- Load: `Catalog().dataset("fGhuKrivDMO9XBIL0000").to_sdata()`


<a id="visium-spatial-gene-expression-kidney-dsnq4w7woarovm9a0000"></a>
## Human kidney

- uid: `dsNq4w7WOarOVm9a0000`
- Page: /datasets/visium-spatial-gene-expression-kidney-dsnq4w7woarovm9a0000/
- Technology: Visium
- Organism: human
- Tissue: kidney
- Condition: nephrolithiasis
- Modality: RNA
- Observations (spots): 939
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41467-023-38975-8
- Publication: https://doi.org/10.1038/s41467-023-38975-8
- Collections: [doi-10-1038-s41467-023-38975-8](/collections/md/1.md#doi-10-1038-s41467-023-38975-8)
- Load: `Catalog().dataset("dsNq4w7WOarOVm9a0000").to_sdata()`


<a id="visium-spatial-gene-expression-uterus-ymbrkzfhndayz2ix0000"></a>
## Mouse uterus

- uid: `YmBRKZfhnDayZ2ix0000`
- Page: /datasets/visium-spatial-gene-expression-uterus-ymbrkzfhndayz2ix0000/
- Technology: Visium
- Organism: mouse
- Tissue: uterus
- Condition: Zika virus infectious disease
- Modality: RNA
- Observations (spots): 1,709
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://pubmed.ncbi.nlm.nih.gov/37598997/
- Publication: https://doi.org/10.1016/j.ajog.2023.08.012
- Collections: [doi-10-1016-j-ajog-2023-08-012](/collections/md/6.md#doi-10-1016-j-ajog-2023-08-012)
- Load: `Catalog().dataset("YmBRKZfhnDayZ2ix0000").to_sdata()`


<a id="visium-spatial-gene-expression-uterine-cervix-smgjlbpj43jpamzf0000"></a>
## Human uterine cervix

- uid: `sMGjLbPj43jPamZf0000`
- Page: /datasets/visium-spatial-gene-expression-uterine-cervix-smgjlbpj43jpamzf0000/
- Technology: Visium
- Organism: human
- Tissue: uterine cervix
- Condition: cervical carcinoma
- Modality: RNA
- Observations (spots): 1,593
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10040725/
- Publication: https://doi.org/10.1002/ctm2.1219
- Collections: [doi-10-1002-ctm2-1219](/collections/md/9.md#doi-10-1002-ctm2-1219)
- Load: `Catalog().dataset("sMGjLbPj43jPamZf0000").to_sdata()`


<a id="visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-fsh2fm611okzhfsr0000"></a>
## Human synovial membrane of synovial joint

- uid: `fSH2FM611OKzhfsr0000`
- Page: /datasets/visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-fsh2fm611okzhfsr0000/
- Technology: Visium
- Organism: human
- Tissue: synovial membrane of synovial joint
- Condition: psoriatic arthritis
- Modality: RNA
- Observations (spots): 927
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE228972
- Publication: https://doi.org/10.1038/s41590-024-01774-4
- Collections: [geo-gse228972](/collections/md/c.md#geo-gse228972)
- Load: `Catalog().dataset("fSH2FM611OKzhfsr0000").to_sdata()`


<a id="10x-xenium-kidney-aw1ausyq5hjuvjup0000"></a>
## Human kidney

- uid: `AW1AUSyQ5HJuvJUp0000`
- Page: /datasets/10x-xenium-kidney-aw1ausyq5hjuvjup0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: kidney
- Modality: RNA
- Observations (cells): 188,382
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9428108
- Collections: [geo-gse315435](/collections/md/f.md#geo-gse315435)
- Load: `Catalog().dataset("AW1AUSyQ5HJuvJUp0000").to_sdata()`


<a id="visium-spatial-gene-expression-kidney-inw7ifkuusoljz2k0001"></a>
## Human kidney

- uid: `iNW7iFKUusoLjz2K0001`
- Page: /datasets/visium-spatial-gene-expression-kidney-inw7ifkuusoljz2k0001/
- Technology: Visium
- Organism: human
- Tissue: kidney
- Condition: tuberous sclerosis
- Modality: RNA
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE299165
- Publication: https://doi.org/10.1038/s41598-025-26541-9
- Collections: [geo-gse299165](/collections/md/0.md#geo-gse299165)
- Load: `Catalog().dataset("iNW7iFKUusoLjz2K0001").to_sdata()`


<a id="visium-spatial-gene-expression-cornea-nbfvsblxiyt0vtey0000"></a>
## Human cornea

- uid: `nBFVsBLXIyt0Vtey0000`
- Page: /datasets/visium-spatial-gene-expression-cornea-nbfvsblxiyt0vtey0000/
- Technology: Visium
- Organism: human
- Tissue: cornea
- Modality: RNA
- Observations (spots): 1,556
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE303036
- Publication: https://doi.org/10.1167/iovs.67.4.7
- Collections: [geo-gse303036](/collections/md/b.md#geo-gse303036)
- Load: `Catalog().dataset("nBFVsBLXIyt0Vtey0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-prvwmpjanzglphpz0000"></a>
## Mouse brain

- uid: `PRVwMPjANzgLPhPZ0000`
- Page: /datasets/visium-spatial-gene-expression-brain-prvwmpjanzglphpz0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 3,075
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE283283
- Collections: [geo-gse283283](/collections/md/4.md#geo-gse283283)
- Load: `Catalog().dataset("PRVwMPjANzgLPhPZ0000").to_sdata()`


<a id="visium-spatial-gene-expression-ovary-ov3fhasvnetyr3ae0000"></a>
## Human ovary

- uid: `Ov3FhASVNetyR3aE0000`
- Page: /datasets/visium-spatial-gene-expression-ovary-ov3fhasvnetyr3ae0000/
- Technology: Visium
- Organism: human
- Tissue: ovary
- Condition: ovarian carcinoma
- Modality: RNA
- Observations (spots): 1,661
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE203612
- Publication: https://doi.org/10.1038/s41588-022-01141-9
- Collections: [geo-gse203612](/collections/md/8.md#geo-gse203612)
- Load: `Catalog().dataset("Ov3FhASVNetyR3aE0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-9h7tdq9fpwlguell0000"></a>
## Mouse liver

- uid: `9H7Tdq9FPWlGUeLL0000`
- Page: /datasets/visium-spatial-gene-expression-liver-9h7tdq9fpwlguell0000/
- Technology: Visium
- Organism: mouse
- Tissue: liver
- Condition: colorectal cancer
- Modality: RNA
- Observations (spots): 1,544
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM6859073
- Collections: [geo-gse221359](/collections/md/e.md#geo-gse221359)
- Load: `Catalog().dataset("9H7Tdq9FPWlGUeLL0000").to_sdata()`


<a id="10x-xenium-lung-4obdqglhk9rosoeq0000"></a>
## Mouse lung

- uid: `4oBdqglHK9RosoEq0000`
- Page: /datasets/10x-xenium-lung-4obdqglhk9rosoeq0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: lung
- Condition: lung adenocarcinoma
- Modality: RNA
- Observations (cells): 179,948
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE335211
- Load: `Catalog().dataset("4oBdqglHK9RosoEq0000").to_sdata()`


<a id="visium-spatial-gene-expression-medulla-oblongata-yzs1obadqoxg8b6a0000"></a>
## Human medulla oblongata

- uid: `YzS1oBAdqoxG8b6A0000`
- Page: /datasets/visium-spatial-gene-expression-medulla-oblongata-yzs1obadqoxg8b6a0000/
- Technology: Visium
- Organism: human
- Tissue: medulla oblongata
- Condition: diffuse intrinsic pontine glioma
- Modality: RNA
- Observations (spots): 3,171
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE280990
- Publication: https://doi.org/10.1186/s40478-025-01952-x
- Collections: [geo-gse280990](/collections/md/b.md#geo-gse280990)
- Load: `Catalog().dataset("YzS1oBAdqoxG8b6A0000").to_sdata()`


<a id="visium-spatial-gene-expression-anterior-cingulate-cortex-8wvy8q8xas3qoj1n0000"></a>
## Human anterior cingulate cortex

- uid: `8WvY8q8xAS3qoJ1N0000`
- Page: /datasets/visium-spatial-gene-expression-anterior-cingulate-cortex-8wvy8q8xas3qoj1n0000/
- Technology: Visium
- Organism: human
- Tissue: anterior cingulate cortex
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE296789
- Publication: https://doi.org/10.1016/j.celrep.2026.117500
- Collections: [geo-gse296789](/collections/md/0.md#geo-gse296789)
- Load: `Catalog().dataset("8WvY8q8xAS3qoJ1N0000").to_sdata()`


<a id="10x-xenium-pleura-8jshmj4enfea7kvs0000"></a>
## Human pleura

- uid: `8jShmJ4enfEA7kVs0000`
- Page: /datasets/10x-xenium-pleura-8jshmj4enfea7kvs0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: pleura
- Condition: pleural mesothelioma
- Modality: RNA
- Observations (cells): 298,395
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE327347
- Publication: https://doi.org/10.1016/j.jtho.2025.11.019
- Load: `Catalog().dataset("8jShmJ4enfEA7kVs0000").to_sdata()`


<a id="10x-xenium-tail-f099ootjzpuuy7un0000"></a>
## Ambystoma mexicanum tail

- uid: `f099ootJzPUUY7Un0000`
- Page: /datasets/10x-xenium-tail-f099ootjzpuuy7un0000/
- Technology: 10x Xenium
- Organism: ambystoma mexicanum
- Tissue: tail
- Modality: RNA
- Observations (cells): 13,102
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE313338
- Load: `Catalog().dataset("f099ootJzPUUY7Un0000").to_sdata()`


<a id="visium-spatial-gene-expression-mammary-gland-8milh1khu0eddgoc0000"></a>
## Mouse mammary gland

- uid: `8MiLh1khU0EDDgOc0000`
- Page: /datasets/visium-spatial-gene-expression-mammary-gland-8milh1khu0eddgoc0000/
- Technology: Visium
- Organism: mouse
- Tissue: mammary gland
- Condition: breast carcinoma
- Modality: RNA
- Observations (spots): 3,787
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7186932
- Collections: [geo-gse230098](/collections/md/8.md#geo-gse230098)
- Load: `Catalog().dataset("8MiLh1khU0EDDgOc0000").to_sdata()`


<a id="visium-spatial-gene-expression-nasal-cavity-iuo5oq0oadyw9cso0000"></a>
## Human nasal cavity

- uid: `iUo5Oq0OAdyw9Cso0000`
- Page: /datasets/visium-spatial-gene-expression-nasal-cavity-iuo5oq0oadyw9cso0000/
- Technology: Visium
- Organism: human
- Tissue: nasal cavity
- Condition: adenoid cystic carcinoma
- Modality: RNA
- Observations (spots): 4,460
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE342687
- Collections: [geo-gse342687](/collections/md/f.md#geo-gse342687)
- Load: `Catalog().dataset("iUo5Oq0OAdyw9Cso0000").to_sdata()`


<a id="visium-spatial-gene-expression-colon-poo79pxnxvvmgaq10000"></a>
## Human colon

- uid: `PoO79PXNXVvmgaQ10000`
- Page: /datasets/visium-spatial-gene-expression-colon-poo79pxnxvvmgaq10000/
- Technology: Visium
- Organism: human
- Tissue: colon
- Condition: colorectal carcinoma
- Modality: RNA
- Observations (spots): 2,340
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE322553
- Publication: https://doi.org/10.1126/science.ady1678
- Collections: [geo-gse322553](/collections/md/9.md#geo-gse322553)
- Load: `Catalog().dataset("PoO79PXNXVvmgaQ10000").to_sdata()`


<a id="vizgen-merscope-striatum-5qiqevy4wfxfk8n60000"></a>
## Mouse striatum

- uid: `5qiQeVY4wfXfK8N60000`
- Page: /datasets/vizgen-merscope-striatum-5qiqevy4wfxfk8n60000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: striatum
- Modality: RNA
- Observations (cells): 75,494
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE262083
- Publication: https://doi.org/10.1038/s41467-025-63429-8
- Collections: [geo-gse262083](/collections/md/e.md#geo-gse262083)
- Load: `Catalog().dataset("5qiQeVY4wfXfK8N60000").to_sdata()`


<a id="phenocycler-fusion-lymph-node-hkux3gcdl5co67m70000"></a>
## Human lymph node

- uid: `hKux3GCdL5co67m70000`
- Page: /datasets/phenocycler-fusion-lymph-node-hkux3gcdl5co67m70000/
- Technology: PhenoCycler-Fusion
- Organism: human
- Tissue: lymph node
- Modality: protein
- Observations (cells): 8,850
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2100
- Publication: https://doi.org/10.1101/2025.04.29.651202
- Collections: [bia-s-biad2100](/collections/md/a.md#bia-s-biad2100)
- Load: `Catalog().dataset("hKux3GCdL5co67m70000").to_sdata()`


<a id="mibi-tof-breast-zz4scav8kymc6tj00000"></a>
## Human breast

- uid: `zz4SCAv8kymC6tJ00000`
- Page: /datasets/mibi-tof-breast-zz4scav8kymc6tj00000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 2,915
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("zz4SCAv8kymC6tJ00000").to_sdata()`


<a id="10x-xenium-ovary-grjrujfd0iuluimz0000"></a>
## Human ovary

- uid: `grJRuJFD0iULuIMZ0000`
- Page: /datasets/10x-xenium-ovary-grjrujfd0iuluimz0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: ovary
- Condition: ovarian cancer
- Modality: RNA
- Observations (cells): 724,177
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE344584
- Load: `Catalog().dataset("grJRuJFD0iULuIMZ0000").to_sdata()`


<a id="vizgen-merscope-brain-wu8i4zeukfqispuo0000"></a>
## Mouse brain

- uid: `wU8I4zeUKFQisPuo0000`
- Page: /datasets/vizgen-merscope-brain-wu8i4zeukfqispuo0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 12,924
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE329718
- Load: `Catalog().dataset("wU8I4zeUKFQisPuo0000").to_sdata()`